Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 175 a.a., NusG antitermination factor (RefSeq) from Shewanella loihica PV-4

 Score = 74.7 bits (182), Expect = 7e-19
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 1   MKRWYLLYCKRGEQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFPSYMFVRFD 60
           MK WYL+YCK   + RA+ +L  Q +E + P +  +    GK  + + PLFP Y+F+ FD
Sbjct: 1   MKSWYLVYCKPRGETRAQQNLALQQIETYLPTLPQQITKSGKNSVKRLPLFPCYLFIYFD 60

Query: 61  FENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQLKQLDCEQLKHATKQLPEK----- 115
                S + + STRGV   +        +   +++ ++  + + L     QLP       
Sbjct: 61  -PLEISVSKIHSTRGVSRIIGCREEMTAIDDAIVHSIRMREAKLLN--ALQLPSDDLLSG 117

Query: 116 --------GQTVRVARGQFAGIEAIYLEPDGDTRSIMLVKMISQQVPMSI 157
                   G  V+   G F  +E I+ E  GD R  +L +++ QQ  +S+
Sbjct: 118 NAEPRLSVGDKVKFVEGPFKELEGIFEEQSGDKRCHILFEIMGQQKRVSV 167