Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., NusG antitermination factor (RefSeq) from Shewanella loihica PV-4

 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 2   KRWYLLYCKRGEQQRA--------KMH-LENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52
           KRWY++    G + R         KMH +E+   E   P   V ++  G+R+  +   FP
Sbjct: 6   KRWYVVQAFSGYEGRVCKSLLEHIKMHGMEHYFGEVLVPTEEVVEMRAGQRRKSERKFFP 65

Query: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFV---RLGPHP-RELQGDLIYQLKQLDCEQLKHA 108
            Y+ V+ +  N  S+  V+S   V+ F+      P P  + + D I Q  Q   E   H 
Sbjct: 66  GYVLVQMEM-NDESWHLVKSIPRVMGFIGGTSDRPAPISDREADAILQRLQETTESPTH- 123

Query: 109 TKQLPEKGQTVRVARGQFAGIEAIYLEPDGDTRSIMLVKMI-SQQVPMSIE 158
            + + E G+ VRV  G FA       E D +   + +  MI  +  P+ ++
Sbjct: 124 -RVMFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELD 173