Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 166 a.a., transcriptional activator rfaH, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 85.9 bits (211), Expect = 3e-22
 Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 9/156 (5%)

Query: 1   MKRWYLLYCKRGEQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFPSYMFVRFD 60
           MK WYLLYCK   + RA+ +L  Q++E + P V  EK  RG++++ + PLFP+Y+F+ FD
Sbjct: 1   MKAWYLLYCKPRSEVRAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFD 60

Query: 61  FENGPSFTTVR---STRGVVDFVRLGPHPRELQGDLIY--QLKQLDCEQLKHATKQLPEK 115
               PS T+V+   STRGV   V        +   +I+  ++K+L   Q    T    + 
Sbjct: 61  ----PSQTSVKQVHSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQSVLDTPLELKT 116

Query: 116 GQTVRVARGQFAGIEAIYLEPDGDTRSIMLVKMISQ 151
           G+ +R   G FA +EAI+ E   + R  +L  ++ Q
Sbjct: 117 GEKIRFKDGPFADLEAIFQEKCPNKRCHVLFNIMGQ 152