Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 183 a.a., transcription antitermination protein NusG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 43.1 bits (100), Expect = 2e-09
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 2   KRWYLLYCKRGEQQRA--------KMH-LENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52
           KRWY++    G + R         KMH +E    E   P   V ++  G+R+  +   FP
Sbjct: 9   KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68

Query: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPR-----ELQGDLIYQLKQLDCEQLKH 107
            Y+ V+ +  N  S+  V+S   V+ F+  G   R     + + D I  L++L       
Sbjct: 69  GYVLVQMEM-NDDSWHLVKSIPRVLGFIG-GTSDRPAPISDREADAI--LRRLQETTASP 124

Query: 108 ATKQLPEKGQTVRVARGQFAGIEAIYLEPDGDTRSIMLVKMI-SQQVPMSIE 158
             + + E G+ VRV  G FA       E D D   + +  MI  +  P+ ++
Sbjct: 125 THRVIFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELD 176