Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., transcription anti-termination protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 41.6 bits (96), Expect = 7e-09
 Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 2   KRWYLLYCKRGEQQRAKMHLE----NQSVECFYPEVCV--EKILR---GKRQMVQEPLFP 52
           K+WY+L    G++ + K +LE    N  +  +  +V +  EK+ +   GK+ + +    P
Sbjct: 6   KKWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYLP 65

Query: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPREL-QGDLIYQLKQLDCEQLKHATKQ 111
            Y+ V      G     +R+T  V+ F+     P  L Q ++   L  +D  Q       
Sbjct: 66  GYVLVEAALV-GEVAHHLRNTPNVIGFLGGSEKPVPLRQSEVNRILGTVDELQETGEELN 124

Query: 112 LPEK-GQTVRVARGQFAGIEAIYLEPDGDTRSI-MLVKMISQQVPMSI 157
           +P   G+TV+V  G F+G   I  E + + + + ++VK+  ++ P+ +
Sbjct: 125 IPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLEL 172