Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 166 a.a., transcription antitermination protein nusG (RefSeq) from Shewanella sp. ANA-3

 Score = 82.0 bits (201), Expect = 4e-21
 Identities = 52/162 (32%), Positives = 87/162 (53%), Gaps = 9/162 (5%)

Query: 1   MKRWYLLYCKRGEQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFPSYMFVRFD 60
           MK WYLLYCK   + RA+ +L  Q++E + P V  EK  RG++++ + PLFP+Y+F+ FD
Sbjct: 1   MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFD 60

Query: 61  FENGPSFTTVR---STRGVVDFVRLGPHPRELQGDLIY--QLKQLDCEQLKHATKQLPEK 115
               PS T+V+   STRGV   V        +   +I+  ++K+L   Q     +   + 
Sbjct: 61  ----PSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKT 116

Query: 116 GQTVRVARGQFAGIEAIYLEPDGDTRSIMLVKMISQQVPMSI 157
           G+ +R   G F  +E I+ E   + R  +L  ++ Q   +++
Sbjct: 117 GEKIRFKDGPFVDLEGIFQEKCPNKRCHVLFNIMGQSKVVTV 158