Pairwise Alignments

Query, 514 a.a., dipeptide/tripeptide permease DtpA from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., proton-dependent oligopeptide transporter (POT) family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  338 bits (867), Expect = 3e-97
 Identities = 189/492 (38%), Positives = 289/492 (58%), Gaps = 22/492 (4%)

Query: 26  NIFKQPNAFYLIFSIEFWERFGFYGMQAILTVYMVKIMGMDESASFVLFGAFSALVYGFV 85
           N   + ++F  +  IE WERFG+YGMQA++  +MV+ +G D+S + +++ A +AL+Y   
Sbjct: 6   NQVSKTHSFMTVSLIELWERFGYYGMQALIVYFMVQRLGFDDSRANLVWSACAALIYVSP 65

Query: 86  AIGGWIGDKVIGTKRAITLGAIVMMVGYVLLGLSTADHPLVGPTLIYIAMGFITVGNGLF 145
           AIGGW+GDK++GTKR + LGA ++ VGY L+ +     P      ++ A+G I VGNGLF
Sbjct: 66  AIGGWVGDKILGTKRTMLLGAGILSVGYALMTV-----PTENTWFMFSALGVIVVGNGLF 120

Query: 146 KANPSSLLAKIYPENDPRLDGAFTMYYMAINLGSFFSMIITPLV--------AIKMGYGM 197
           K N  +L+ KIY  +D ++D AFT+YYMA+N+GS FSM++TP +          + G+  
Sbjct: 121 KPNAGNLVRKIYEGDDSKIDSAFTIYYMAVNVGSTFSMLLTPWIKDYVNAQYGNEFGWHA 180

Query: 198 AFGVSAVGLAITVVNFLFCLRMLKGTGSPADLMPVNKMYLVLVAVGSIIASLVCSYLLQN 257
           AF V  VG+ + + N+    + L   GS  D  PVNK  L +V   + ++ +  + +L+ 
Sbjct: 181 AFAVCCVGILVGLGNYALMHKSLANYGSEPDTRPVNKKSLAIVLALAALSVVASAIILEY 240

Query: 258 LTLAHGILVVAGLFILGCYFKEAFSMSGIERAKMLVAFILMLQGVVFFVLYFQMPTSLNF 317
             +A   +  AG+ +LG +F    +    ERA ++ A IL +Q V FF+ Y QM TSL  
Sbjct: 241 EDVARVFVYAAGVAVLGIFFHLIRTSEPSERAGLIAALILTVQTVFFFIFYQQMSTSLAL 300

Query: 318 FAINNV--EHHIFGFDV---APEQFQALNPFWIMIASPILAATY---GKLGDKLAMPFKF 369
           FA+ NV  +  +FG  +   +P QFQALNP WIM+ SP+LA +Y   G+     ++  KF
Sbjct: 301 FALRNVDWDFQVFGTHLWTWSPAQFQALNPIWIMVLSPVLAWSYSWAGRNNKDFSIAAKF 360

Query: 370 AFGMALCALSFLVLSWGTLFANEQGIISSNWLIASYAFQSIGELLVSGLGLAMVAQLVPQ 429
           A G A+ A+ F +  +   FA   G  SS  +I  YA  S+GELLVSGLGLAM+A+ VP 
Sbjct: 361 ALGFAVVAIGFFIYGFAGQFA-VNGKTSSWVMIWGYASYSLGELLVSGLGLAMIARYVPA 419

Query: 430 RMMGFAMGMWFLTSASAAVIAGWVASLTSTPANVSGATESLHIYGEVFAQIGYVTAGIAI 489
           RM GF MG +F+ S  +  + G VA+  S P ++    ++L +Y  +F ++G       I
Sbjct: 420 RMGGFMMGAYFVASGISQYLGGVVANFASVPQDLVDPLQTLPVYTNLFNKLGVAAVVCTI 479

Query: 490 VTFMIAPKLTRI 501
           +   + P + R+
Sbjct: 480 IALAVLPLMRRL 491