Pairwise Alignments

Query, 514 a.a., dipeptide/tripeptide permease DtpA from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., proton/peptide symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  135 bits (340), Expect = 4e-36
 Identities = 128/453 (28%), Positives = 202/453 (44%), Gaps = 51/453 (11%)

Query: 29  KQPNAFYLIFSIEFWERFGFYGMQAILTVYMVKIMGM---DESASFV---LFGAFSALVY 82
           K P     I + E  ERF FYGM+ ILT +++  + +   +E    V   +F +F   VY
Sbjct: 9   KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVY 68

Query: 83  GFVAIGGWIGDKVIGTKRAITLGAIVMMVGYVLLGLSTADHPLVGPTLIYIAMGFITVGN 142
            F  +GGWI D+  G    I   +++  VG+  L +   +H + G    Y  +  I +G+
Sbjct: 69  FFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--EHSVQG---FYTGLFLIALGS 123

Query: 143 GLFKANPSSLLAKIYPENDPRL-DGAFTMYYMAINLGSFFSMIITPLVAIKMGYGMAFGV 201
           G  K   SS +   + +++  L   AF M+Y  IN GSFF+ +  PL+    G  +AFG+
Sbjct: 124 GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183

Query: 202 SAVGLAITVVNFLF----CLRMLKGTGSPADLMPVNKMYLVLVAVG--------SIIASL 249
             V + +  V F       + M      P   +PV +  L+    G        ++I  +
Sbjct: 184 PGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGV 243

Query: 250 VCSYLLQNLTLAHGILVVAGL---FILGCYFKEAFSMSGIERAKML-----------VAF 295
             +Y L N+     + +VAGL    +L   F  A +   +ERA+             V  
Sbjct: 244 SAAYALVNIPT---LGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLR 300

Query: 296 ILMLQGVV--FFVLYFQMPTSLNFFAINNVEHHIFGFDVAPEQFQALNPFWIMIASP--- 350
           IL+L  +V  F+ L+ Q  ++    A + V+   F     P   QALNP  +M+  P   
Sbjct: 301 ILVLFALVTPFWSLFDQKASTWILQANDMVKPQWF----EPAMMQALNPLLVMLLIPFNN 356

Query: 351 -ILAATYGKLGDKLAMPFKFAFGMALCALSFLVLSWGTLFANEQGIISSNWLIASYAFQS 409
            +L     ++G KL    K   G+A+  LS++V+    L  +    +S  W I  YA  +
Sbjct: 357 FVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416

Query: 410 IGELLVSGLGLAMVAQLVPQRMMGFAMGMWFLT 442
            GE+LVS  GL       P+ M G  M  W L+
Sbjct: 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLS 449