Pairwise Alignments

Query, 514 a.a., dipeptide/tripeptide permease DtpA from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., putative H+/peptide symporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  152 bits (383), Expect = 4e-41
 Identities = 124/464 (26%), Positives = 208/464 (44%), Gaps = 59/464 (12%)

Query: 29  KQPNAFYLIFSIEFWERFGFYGMQAILTVYMVKIMGMDESASFVLFGAFSALVYGFVAIG 88
           K P            ERFGFY M AIL +++    GM+   +  ++  F   +Y    +G
Sbjct: 4   KHPKGLIAAALANLGERFGFYTMMAILVLFLQAKFGMNGKEAGFIYSTFYFSIYILALVG 63

Query: 89  GWIGDKVIGTKRAITLGAIVMMVGYVLLGL---STADHPLVGPTLIYIAMGFITVGNGLF 145
           G I DK    K  I  G ++M VGY+LL +   +  D+      +   ++  I  GNGLF
Sbjct: 64  GIIADKTRNYKGTIFTGIVLMAVGYLLLAIPSKTPVDNKTFYLVITCASLFVIAFGNGLF 123

Query: 146 KANPSSLLAKIY--PENDPRLDGAFTMYYMAINLGSFFSMIITPLVAIKMGYGMAFGVSA 203
           K N  +L+ ++Y  P+     D  F+++YM IN+G+ F+    P  A+ +     + +S 
Sbjct: 124 KGNLQALVGQMYDNPQYASMRDSGFSLFYMFINIGAIFA----PFAAVGV---RNWWLST 176

Query: 204 VGLAITVVNFLFCLRMLKGTGSPADLMPVNKMYLVLVAVGS--------IIASLVCSYLL 255
            G          C   L GT SP       + Y  LV   S          AS   +   
Sbjct: 177 FGYNYDADLPALCHGHLAGTLSP----EATETYHTLVEKASNAPVQDYTAFASDYLNVFT 232

Query: 256 QNLTLAHGILVVAGLFILGCYF----------KEAFSMS--------GIERAKMLVAFIL 297
                A G+ ++A +  L  Y           K A + S         I+  K  +  + 
Sbjct: 233 TGFHYAFGVAIIAMVISLTIYLLNKRNFPDPSKRAVASSASSATVEMSIQEVKQRMYALF 292

Query: 298 MLQGVV--FFVLYFQMPTSLNFFAINNVEHHIFGFDVAPEQFQALNPFWIMIASPILAAT 355
            + GVV  F+  + Q   +L +FA    + ++FG  ++ E FQ+LNPF+++  +P++ A 
Sbjct: 293 AVFGVVIFFWFSFHQNGLTLTYFAKEYTDLNLFGMPISAELFQSLNPFFVVFLTPVIMAI 352

Query: 356 YG---KLGDKLAMPFKFAFGMALCALSFLVLSWGTLFAN---EQGIISSN---------W 400
           +    + G + + P K A GM + AL+F+V++ G+ FAN    + II+            
Sbjct: 353 FASQRRRGKEPSTPKKIAIGMGIAALAFIVMAVGSYFANLPLHKDIIAVGTSPVKVTPFL 412

Query: 401 LIASYAFQSIGELLVSGLGLAMVAQLVPQRMMGFAMGMWFLTSA 444
           L+ +Y   ++ EL +S LG++ V+++ P +  G   G W   +A
Sbjct: 413 LMLTYLILTVAELYISPLGISFVSKVAPPKYQGIMQGGWLGATA 456