Pairwise Alignments

Query, 306 a.a., co-chaperone YbbN from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., hypothetical thioredoxin-like protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  197 bits (500), Expect = 3e-55
 Identities = 115/284 (40%), Positives = 167/284 (58%), Gaps = 5/284 (1%)

Query: 28  IIDVSQHNFHQVLQHSTLSPVLFYFWAPISHESAELLPAIEQLTERYQGAFVLARLNCQE 87
           I+D+++ N  QV+  S    V+  FWA    +S  ++  +EQL  ++ G FVLA++NC+ 
Sbjct: 4   ILDLTKDNIQQVVDASMQQLVVMVFWAQPQPQSVAMVQTLEQLATQHAGRFVLAKVNCEA 63

Query: 88  EQGIAAQFGIQAIPTIALFIEGKPVDGLGGPQPIEAVEEMLKRHLPSDEERLMYQGFEL- 146
           E  IA  F IQA+PT  +  +G+P+DG  G Q    V  ML++HLP   +  + Q   L 
Sbjct: 64  ELEIANYFRIQALPTTLVLDKGQPIDGFAGLQEAVQVSAMLEKHLPPLWQLQLEQAKALL 123

Query: 147 ----AEQEQFSEALSLLSTLSDEWRNKGEVKLTLARCYLETGAVEAAQTELANMPLEYQQ 202
                  E  + A  LL        +  EV L LA  YL  G +  AQ  L  + L  Q 
Sbjct: 124 ALTQVSAEDLTTAAVLLKDAYSASNHAAEVSLVLADVYLMQGELAQAQGLLEQIGLADQD 183

Query: 203 GEYKTLIARLELHQQAANSPEIIALEQEWNSDPQNPNIAIELAKQYHHVKRDEEALSLLW 262
           G Y++L A+L L   AA++PEI  L+Q++  +P +  + +EL K  H   RDEEAL+ L+
Sbjct: 184 GYYQSLRAKLTLALDAADTPEIRELQQKFEQNPHDLVLLLELCKALHSAHRDEEALTHLY 243

Query: 263 SWLSKNLNTLDGEMKKTFMDILTALGQGHPLANQYRKKLYSLLY 306
             LSK+L+  +G++K+TFM+ILTALGQG+ LANQYR+KLY+LLY
Sbjct: 244 GVLSKDLSAENGKVKQTFMEILTALGQGNSLANQYRRKLYTLLY 287