Pairwise Alignments

Query, 349 a.a., chitoporin from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., porin (RefSeq) from Shewanella amazonensis SB2B

 Score = 49.7 bits (117), Expect = 1e-10
 Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 1   MDKMFKRTLLGAAVAMASTGAFAASETGAIGVLSDFNVQAYGVAAISAFYQEDSNGYDYE 60
           M   F +TLL +A+  AS  +  A+E   +    +  VQ+   A        +S      
Sbjct: 1   MMNAFNKTLLVSALTAASLASAQAAEPLTVYGKLNVTVQSNDEAG-------ESETVVQS 53

Query: 61  NESRIGFRASKDMFDNVNVFMQIESGY-VGEDGKGSTLGARDTFLGLQGDWGKVRFGRML 119
           N SR+G + + ++  ++  F  IE     G D K + L AR+ F+GL+G++G +  GR  
Sbjct: 54  NASRLGVKGAFELSSSLEAFYTIEYEVDAGSDAKENFL-ARNQFVGLKGNFGALSVGRND 112

Query: 120 TPLYEIVDWPYSNPGLGRVFDWGGDVAGHYDRKGDIAR---YDSPAFGGLTFNISAGRGD 176
           T L        +   + +  D  GD+   +  +  I +   Y SP FGG  F + A    
Sbjct: 113 TML------KIAQGKVDQFNDLSGDLKSLFKGENRIEQTVTYLSPEFGG--FKVGATYAA 164

Query: 177 VGTKS---SNHFGAAAHYNAADI 196
            G KS    + F  AA Y  A +
Sbjct: 165 EGAKSQAGEDGFSLAAMYGDASL 187