Pairwise Alignments

Query, 349 a.a., chitoporin from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., outer membrane protein (porin) from Marinobacter adhaerens HP15

 Score = 56.6 bits (135), Expect = 9e-13
 Identities = 81/319 (25%), Positives = 133/319 (41%), Gaps = 44/319 (13%)

Query: 6   KRTLLGAAVAMA--STGAFAASETGA--IGVLSDFNVQAYG-VAAISAFYQEDSNGYDYE 60
           K+TL+ +A+A A  S   FA SE  A  +    D     YG +  +      D  G   E
Sbjct: 2   KKTLIASAIAAATFSGSVFAQSEMSASELAAKMDSMPSVYGNIQYVLTHTNVDGAGSTVE 61

Query: 61  ---NESRIGFRASKDMFDNVNVFMQIESGYVGEDGKGSTLGAR---DTFLGLQGDWGKVR 114
              N S +G +   ++   +  F ++E   +  D K S+ G     + ++G++GD     
Sbjct: 62  HADNGSTLGVKHDHEIAPGITGFFKLELEGINADDKSSSNGIDALDEAYIGVKGD----S 117

Query: 115 FGRMLTPLYEIVDWPYSNPGLGRVFDWGGDVAGHYDR-KGDIARYDSPAFGGLTFNISAG 173
           FG++     + V +  +   +G   + G D+ G+Y   +GD+ +Y SP+FGGLT   +  
Sbjct: 118 FGQVWVGSDDSV-YESAIVKIGNFHEVGSDIFGNYSTGEGDLVQYMSPSFGGLTVAAAVQ 176

Query: 174 -RGDVGTKSSNHFGAAAHYNAADIVTFHVGYENNSNFKYDYKTKDTAGKDVDNTFLTDAT 232
             GD  TK     GA   Y    + T+ V     S F  D      A  + +N++   AT
Sbjct: 177 VNGDNDTKG----GADKSYPYQLVATYAVDALEVS-FGMDSNDGGAAADNNENSYGLTAT 231

Query: 233 AYIVGFELPLPAGFGLAGAYKYTEGASKTVKGQEGEQGQYSLIGQYWNGPWGFKVGYAAN 292
            Y  G        F + G Y+  +  +  V           ++G Y  G   F + Y   
Sbjct: 232 -YSAG-------DFSVIGEYQTRKDVNDIV----------GVMGVYTMGANQFALSYQM- 272

Query: 293 LESEVNGVEQKDDDEVLSA 311
           L+ + +G   K D  +L A
Sbjct: 273 LDDDASG--DKKDTVILQA 289