Pairwise Alignments

Query, 349 a.a., chitoporin from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., porin (RefSeq) from Shewanella sp. ANA-3

 Score = 60.5 bits (145), Expect = 6e-14
 Identities = 64/234 (27%), Positives = 97/234 (41%), Gaps = 22/234 (9%)

Query: 1   MDKMFKRTLLGAAVAMAS-TGAFAASETGAIGVLSDFNVQAYGVAAISAFYQEDSNGYDY 59
           M  +F +TLL +A+A A+   A+AA      G L+        V A S   + DS     
Sbjct: 1   MMNVFCKTLLASALASATLASAYAAEPLTVYGKLN--------VTAQSNDEKGDSTTTIQ 52

Query: 60  ENESRIGFRASKDMFDNVNVFMQIESGYVGEDGKGSTLGARDTFLGLQGDWGKVRFGRML 119
            N SR G +   ++  ++  F  +E              AR+ F+GL+G +G    GR  
Sbjct: 53  SNASRFGVKGDFELSSSLEAFYTVEYEVDTGAATSDNFKARNQFVGLKGAFGSFSVGRND 112

Query: 120 TPLYEIVDWPYSNPGLGRVFDWGGDVAGHY---DRKGDIARYDSPAFGGLTFNIS-AGRG 175
           T L        S   + +  D  GD+   +   +R G  A Y SP+ GG  F  + A  G
Sbjct: 113 TLL------KISQGNVDQFNDLSGDLKSLFKGENRLGQTATYLSPSIGGFVFGATYAAEG 166

Query: 176 DVGTKSSNHFGAAAHYNAADI--VTFHVGYENNSNFK-YDYKTKDTAGKDVDNT 226
           D   ++ + F  AA Y  A +    F+     +S+ K Y+       GK  D T
Sbjct: 167 DADQQAQDGFSLAAMYGDAKLKKSPFYAAIAYDSDVKGYEILRASVQGKIADLT 220