Pairwise Alignments

Query, 349 a.a., chitoporin from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., porin (RefSeq) from Shewanella sp. ANA-3

 Score = 47.4 bits (111), Expect = 6e-10
 Identities = 68/303 (22%), Positives = 113/303 (37%), Gaps = 59/303 (19%)

Query: 1   MDKMFKRTLLGAAVAMASTGAFAAS-------ETGAIGVLSDFNVQAYGVAAISAFYQED 53
           M K F    + + +A+AS GA A         E       +   +Q+ G   +++ Y ++
Sbjct: 1   MKKTFISASVASVLALASFGALAEGPSFYGRLELAVTNTETGATLQS-GTNGLNSNYADE 59

Query: 54  SNGYDY--ENESRIGFRASKDMFDNVNVFMQIESGYVGEDGKGSTLGARDTFLGLQGDWG 111
           +N   Y   N S +G + ++ + D  +V  Q+E       G G    AR+T+LGL+ + G
Sbjct: 60  NNAGTYLENNFSLLGVKGTEKIADGYDVVYQMEFQVESTSGSGDVFKARNTYLGLKTNAG 119

Query: 112 KVRFGRMLTPLYEIVDWPYSNPGLGRVFDWGGDV---AGHYDRKGDIARYDSPAFGGLT- 167
            V  GR  T   +      +  G+    +   D+        R  D   Y SP  GGL  
Sbjct: 120 TVLVGRNDTVFKQ------AEGGVDIFGNTNADIDRLVSAQTRSADGVWYFSPKLGGLVT 173

Query: 168 ---------------------------FNISAGRGDVGTKSSNHFGAAAHYNAADIVTFH 200
                                      + +SA  GD   K  N++ A A+      V  +
Sbjct: 174 LNANYLFDDNNDEKIDGKPAPDTNESLYALSATLGDSKFKEQNYYVAVAYNKGIAGVDAY 233

Query: 201 VG--------YENNSNFKYDYKTKDTAGKDVD-NTFLTDATAYIVGFELPLPAGFGLAGA 251
            G        ++    F+      D+A   +D NT+  + +  + G  L    G+  AG 
Sbjct: 234 RGVAQAKLGQFKLGGLFQNSESVTDSA---IDGNTYFVNVSYDLNGVNLKAEYGYDEAGF 290

Query: 252 YKY 254
            KY
Sbjct: 291 GKY 293