Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  126 bits (316), Expect = 3e-33
 Identities = 142/557 (25%), Positives = 236/557 (42%), Gaps = 64/557 (11%)

Query: 30  IPDAEYDRLMRELLELEAAHPELMSSDSPSLRVGGRPLDAFESVVHEIPMLSLDNAFDDG 89
           + D  YD+   EL +       L + D P    GG+       + H +    L+   D  
Sbjct: 57  VADELYDQSRTELGQWRHCF-NLAAPDDPLRSAGGK-------IPHPVVHTGLEKLKDAD 108

Query: 90  ELESFYRRMTDRIPAVQHSAFCCEPKLDGLAVSLLYENGVLTRAATRGDGTTGENITENV 149
            + ++ R   D            +PK+DG+AV+L Y  G L +A +RGDG  G + T N 
Sbjct: 109 AVGAWLRGRKD---------VWAQPKVDGVAVTLAYRKGRLHQAISRGDGVQGHDWTPNA 159

Query: 150 RTIKSIPLRLQGADFPTRLEVRGEVFMP-----KAGFEALNARALKKGEKQFVNPRNAAA 204
           R I +IP RL+    P  L V+GE++       +A   +LNAR    G     N     A
Sbjct: 160 RKIGAIPQRLRQ---PLDLVVQGELYWRLLTHVQASSGSLNARGTVAGLMARTNMTAQEA 216

Query: 205 GSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHYQRFLQLKGWGLPICPETKLVTSLA 264
             +  L      + P         + E G   T HY + +Q+                LA
Sbjct: 217 ADIG-LFVWDWPEGPATLPERMAALNELGFADTLHYNQPVQV----------------LA 259

Query: 265 EVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLGFVARAPRWAIAYKFPAQEELTLL 324
           + + +       R  L +  DG+V+        +R  + ARAP W+ A+K+P  + L  +
Sbjct: 260 DAEHWRDHWY--RTPLPFASDGIVLHQSRRPSADR--WQARAPFWSAAWKYPYAQALAEV 315

Query: 325 NDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLGVMVGDTVVIRRAGDVI 384
             V F+VGRTG ITPV +LE + +    +   ++ +    + + +  GD V I  AG  I
Sbjct: 316 RKVHFKVGRTGRITPVLELERIRLDDRWIRRVSVSSLKRWKEMDIRPGDRVAISLAGLTI 375

Query: 385 PQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGEAVARCSGGLICQAQRKEALKHFV 444
           P++ SVVL  R    + +  P      Q+D   +   +  + + G  C++Q    L    
Sbjct: 376 PRLDSVVL--RSAERQDLNVP-----AQTDYHFL---SCWQPTAG--CESQFLARLGWLS 423

Query: 445 SRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAGELTILERMGPKSAQNVIDALNKAK 504
            ++ + +  +G    E+L+    +    D   L A EL  +   G  S+  ++ +L+ A+
Sbjct: 424 GKQGLALPHVGPGTWEKLLAAGRLDGLLDWMTLDAAELANIAGFGEHSSTRLLASLHSAR 483

Query: 505 QTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFF 564
           Q    ++L ALG+   GEA            + + + S EQ+     +G   A+ L AFF
Sbjct: 484 QRPFAQWLKALGLPPAGEARLEG------PWQVLVERSTEQWQAEAGIGPGRAAQLSAFF 537

Query: 565 AQDRNQQVINELLEQGI 581
              + Q + + L   G+
Sbjct: 538 RDPQVQALSDVLRTAGV 554