Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  630 bits (1626), Expect = 0.0
 Identities = 336/604 (55%), Positives = 423/604 (70%), Gaps = 27/604 (4%)

Query: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
           M+ V  R+ +LR  L +H  RY+V D PSIPDAEYDRL  EL  LE  HPEL++SDSP+ 
Sbjct: 1   MTAVETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQ 60

Query: 61  RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIP-----------AVQHSA 109
           RVG   L AF  V HEIPMLSL NAFD+  +  F RR+T+ +            AV++S 
Sbjct: 61  RVGSMALSAFSQVRHEIPMLSLGNAFDEATMREFDRRVTEGLDLPMGDLLGGGAAVEYS- 119

Query: 110 FCCEPKLDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLE 169
             CEPKLDGLAVSLLY++G+L R ATRGDGTTGE+I+ NVRT+++IPL+LQG+ +P  LE
Sbjct: 120 --CEPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLE 177

Query: 170 VRGEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGV 229
           VRGEV+M KAGFE LNA  L+ G K F NPRNAAAGSLRQLDSKITA RPL F  Y +G 
Sbjct: 178 VRGEVYMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQ 237

Query: 230 IEGGELATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVI 289
           +   ++A +H     QLK WGLPI  E KL   + E   +Y+DI +RR +L YEIDGVV 
Sbjct: 238 VTT-DIADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVF 296

Query: 290 KVDDIQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVG 349
           KV+ I  Q  LGF AR PRWAIA+KFPA EELT L DVEFQVGRTGA+TPVA+L+PV V 
Sbjct: 297 KVNSIASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356

Query: 350 GVTVSNATLHNADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCP 409
           GVTV+NATLHN DE+ RLG+M+GDTV+IRRAGDVIPQ+V V+ ERRPE+A+ +  P +CP
Sbjct: 357 GVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITERRPEHARPVAIPQQCP 416

Query: 410 VCQSDVER------------VEGEAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDK 457
           VC S VER            +   AV RC G L C AQ K+A+ HFVSR+AMD+EGLG+K
Sbjct: 417 VCGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEK 476

Query: 458 VIEQLVDREMVSTPADLFRLRAGELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGI 517
            +EQLVD  +V +PADL+ L   ++  LE     S++N++ A+  +K+ +L +F+YALGI
Sbjct: 477 SVEQLVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKKPSLARFIYALGI 536

Query: 518 REVGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELL 577
            +VGE TA  LA+   SLE +Q A  +    +PDVG+ VA  + +FF    N+QVI +LL
Sbjct: 537 PDVGEETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDPHNRQVIKDLL 596

Query: 578 EQGI 581
             G+
Sbjct: 597 RHGL 600



 Score = 95.1 bits (235), Expect = 1e-23
 Identities = 71/168 (42%), Positives = 91/168 (54%), Gaps = 10/168 (5%)

Query: 506 TTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQAS-LEQFIEVPDVGVVVASHLQAFF 564
           TTL  FL  L I  VG   A  LA  F SLEA+  A  L+    +P+     A+ ++ FF
Sbjct: 616 TTLGGFLDKLDIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQALPEKQ---ANAVREFF 672

Query: 565 AQDRNQQVIN----ELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAAL 620
           A   N+Q       +L + G+ W +     V      AG   VLTGS   +SR+ AK  L
Sbjct: 673 ANASNRQQAEAAERQLRDFGMHWQS--EKKVVEGLPEAGHTWVLTGSLELMSRDVAKDKL 730

Query: 621 QALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFL 668
           ++LGAKV GSVS  T  V AG  AGSKL KA ELG++V DE+A + FL
Sbjct: 731 ESLGAKVAGSVSVKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVAFL 778