Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., NAD-dependent DNA ligase (contains BRCT domain type II) from Pseudomonas stutzeri RCH2

 Score =  126 bits (316), Expect = 3e-33
 Identities = 138/582 (23%), Positives = 236/582 (40%), Gaps = 64/582 (10%)

Query: 6   QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVGGR 65
           Q +  L+  L      Y+      + D  YD+    L + +   P  +++  P    GG 
Sbjct: 30  QEIISLQLQLQHWDDAYHRRGLALVDDEIYDQSRARLHDWQRCFPSTLAAPEPLAGAGG- 88

Query: 66  PLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAVSLLY 125
                  V H +    L    D+  +  +  R  D            +PK+DG+AV+L+Y
Sbjct: 89  ------PVPHPVMQTGLVKLADEQAVADWIARRED---------LWIQPKVDGVAVTLVY 133

Query: 126 ENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGFEALN 185
            +G+L +A +RGDG +G++ T N R + +IP  L     P+ + ++GE++          
Sbjct: 134 RDGLLQQAISRGDGRSGQDWTANARRLPAIPSLLPE---PSEVILQGELYWRL------- 183

Query: 186 ARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVI-----EGGELATSHY 240
                   +Q V      AG+  ++   +  +   A  A  +G+       G E  T   
Sbjct: 184 --------EQHVQATLGGAGARAKVAGAMAGRPLTAEAAQQIGLFVWDWPNGPEAMTVRL 235

Query: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
           +R   L   G        L  +  E +A +  +   RQ L +  DGVV++       ER 
Sbjct: 236 ER---LAAMGFTHSQRFSLPLAGLE-QARHWRVQWYRQPLPFASDGVVLRQGRRPPAERW 291

Query: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
                 P WA A+K+P +  +T +  V+F++GRTG ITP+ +L PV +    +   +L +
Sbjct: 292 ---QAEPHWAAAWKYPLRTAVTEVRAVDFRIGRTGRITPLLRLTPVSLDDRQIRTLSLGS 348

Query: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
            +    L V  GD V +  AG  IPQ+ SV+               R  V   D  +   
Sbjct: 349 LERWRTLDVRPGDQVAVALAGHSIPQLDSVIWRS----------AERAAVEAPDPSQFHA 398

Query: 421 EAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG 480
            +  +   G  C+ Q    L     ++ + + G G    + L+D  ++        L A 
Sbjct: 399 HSCWQPRPG--CEQQFIARLVWLSGKQGLHLPGTGAGSWQALLDAGLLPDLLAWLELDAA 456

Query: 481 ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ 540
            L     +G   A  +  +   A+Q  L ++L ALG+        ++LA    S + +  
Sbjct: 457 ALQQAPGIGKVRAAKLAASFALARQRPLTQWLKALGL-----PGGISLAPE-TSWDVLAA 510

Query: 541 ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGIT 582
            ++ Q+   P +G   A  L AFF     Q + + L   GI+
Sbjct: 511 RTVSQWQGEPGIGPARADQLHAFFRTAELQALRHRLRAVGIS 552