Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 791 a.a., DNA ligase, NAD-dependent from Pseudomonas stutzeri RCH2

 Score =  622 bits (1603), Expect = 0.0
 Identities = 332/597 (55%), Positives = 424/597 (71%), Gaps = 21/597 (3%)

Query: 5   AQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVGG 64
           A+R+ +LR  +  H  RYYV D PS+PDAEYDRL  EL  LEA HPEL++ +SP+ RVGG
Sbjct: 8   AERIAKLRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPESPTQRVGG 67

Query: 65  RPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAF--------CCEPKL 116
             L AF  V HE+PMLSL NAF++ +L  F RR+ + +       F         CEPKL
Sbjct: 68  AALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGAGVVVEYSCEPKL 127

Query: 117 DGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFM 176
           DGLAVSLLYENG L R ATRGDG+TGE+I+ NVRT+++IPL+L G+ +P  LEVRGE++M
Sbjct: 128 DGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVLEVRGEIYM 187

Query: 177 PKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELA 236
           PKAGFEALNAR L+ G K F NPRNAAAGSLRQLDSKITA RPL   AY VG  +G EL 
Sbjct: 188 PKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVGRSDG-ELP 246

Query: 237 TSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQL 296
            +H      LK WGLPI  E KL   +AE +A+Y  I  +R +L YEIDGVV KV+ +  
Sbjct: 247 GTHIGILEALKSWGLPITRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVFKVNAVAQ 306

Query: 297 QERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 356
           Q  LGF AR PRWAIA+KFPA+EE+T L DVEFQVGRTGAITPVA+L+PV V GVTVSNA
Sbjct: 307 QRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVAGVTVSNA 366

Query: 357 TLHNADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVE 416
           TLHN DE+ RLGVM+ DTV++RRAGDVIPQI+ V+ ERRP +A+++  P +CPVC S VE
Sbjct: 367 TLHNMDEVARLGVMIRDTVIVRRAGDVIPQILGVIAERRPTDARAVHVPEQCPVCGSAVE 426

Query: 417 RVE-------GEAVA-----RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVD 464
           R +        EAV+     RC G L CQAQ K+A+ HFVSR+AMD++GLGDK++EQLVD
Sbjct: 427 RTQLIKRSKGREAVSEGSIYRCVGRLACQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLVD 486

Query: 465 REMVSTPADLFRLRAGELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEAT 524
           + +VS+PADL+ L   ++  LE     S +N+++A++ +++ +L +F+YALGI +VGE T
Sbjct: 487 KGLVSSPADLYCLTHEQVIELEGFAEISTRNLLNAIDASRKPSLARFIYALGIPDVGEET 546

Query: 525 ALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGI 581
           A  LA+   SLE I     +  + +PDVG+ VA  + +FF  + N+ VI  L E+G+
Sbjct: 547 AKLLARALGSLERIGLVLPDVLVYLPDVGLEVAHEIHSFFEDEHNRTVIALLRERGV 603



 Score = 92.8 bits (229), Expect = 5e-23
 Identities = 65/159 (40%), Positives = 85/159 (53%), Gaps = 6/159 (3%)

Query: 507 TLPKFLYALGIREVGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQ 566
           TL   L  L I  +    A  LA+ F SL+AI  A      +V  +    A  L+ +F +
Sbjct: 620 TLADLLDRLNIPHIARTGAQRLAERFGSLDAIIAADWLDLRQVERLNEKAARSLRDYFDK 679

Query: 567 DRNQQ----VINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQA 622
             N +    +  +L E G+ W +   A  A    LAG+  VLTG+   +SR++ KA L+A
Sbjct: 680 PENAERARLIEAQLREFGMHWESERKA--AEGLPLAGQTWVLTGTLETMSRDEGKARLEA 737

Query: 623 LGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDE 661
           LGAKV GSVS  T  V AG  AGSKLAKA ELG+ V DE
Sbjct: 738 LGAKVAGSVSAKTACVVAGPGAGSKLAKANELGVTVLDE 776