Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 833 a.a., DNA ligase (EC 6.5.1.2) from Xanthomonas campestris pv. campestris strain 8004

 Score =  560 bits (1444), Expect = e-164
 Identities = 306/644 (47%), Positives = 404/644 (62%), Gaps = 66/644 (10%)

Query: 3   DVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRV 62
           D AQR+  LR+ + +   RY+V D P I D EYDRL+REL  LEAAHPEL ++DSP+ RV
Sbjct: 6   DPAQRIDALRQRIEDANYRYHVLDEPQIADVEYDRLLRELEALEAAHPELATADSPTQRV 65

Query: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAVS 122
           G      F  V H +PMLSL NAF D E+  F RR+++R+   Q   FC EPKLDGLA+S
Sbjct: 66  GYLAASRFAEVRHVLPMLSLGNAFSDEEVAEFVRRISERLERKQ-PVFCAEPKLDGLAIS 124

Query: 123 LLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGFE 182
           L YE G   + ATRGDG TGE+++ N+RT+K+IPLRL+G  +P  LEVRGEV+MP+A FE
Sbjct: 125 LRYEQGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGTGWPEVLEVRGEVYMPRAAFE 184

Query: 183 ALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHYQR 242
           A NA+   +G K   NPRN AAGSLRQLD++ITAQRPL+F+AY VG +  G L  +H   
Sbjct: 185 AYNAQMRLQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVADGALPPTHSTM 244

Query: 243 FLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLGF 302
             QL+ WG P+    ++V     +  +Y+ I + R  L ++IDGVV K+DD+  Q  +GF
Sbjct: 245 LAQLREWGFPVSQLVEVVQGSEGLLTYYRRIGEARDGLPFDIDGVVYKLDDLAGQREMGF 304

Query: 303 VARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNAD 362
           V+RAPRWA+A+KFPAQE+ T +  +E Q+GRTGA TPVA+L+PV V GV V+NATLHNAD
Sbjct: 305 VSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVVVTNATLHNAD 364

Query: 363 EIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGEA 422
           +I RL V VGDTV++RRAGDVIP++  VV E+RP    +   PT+CPVC S++ R EG+A
Sbjct: 365 QIARLDVRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTHAWQMPTQCPVCGSEIVREEGQA 424

Query: 423 VARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVI--------------------EQL 462
           V RCSG L C AQRKEA +HFVSR+AMDV+GLG+K I                    +QL
Sbjct: 425 VWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQGVADLYLLNVDQL 484

Query: 463 VDREMVST---PADLFR-----LRAGELTILE---------------------------- 486
           +   ++ST   P    R     L AG    +E                            
Sbjct: 485 LQLRLISTADSPHAFLREAREHLAAGAYAQVEQTMVGIGVDLAGVQPAPQTWQADLLRAG 544

Query: 487 ---------RMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEA 537
                    ++  K A+N+I+A+  ++ TTL +FL+ALGI  VGE+TA  L+  F  L+ 
Sbjct: 545 LPAFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFGELDV 604

Query: 538 IQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGI 581
           I+      F  VPD+G  VA  L  FF Q  NQQ I++LL++G+
Sbjct: 605 IRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGV 648



 Score = 85.5 bits (210), Expect = 9e-21
 Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 14/161 (8%)

Query: 515 LGIREVGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRN----- 569
           L I +V    A  LA    S +A+  +  +  ++      V+AS LQ + A+  N     
Sbjct: 673 LDIPKVTPVRAQQLAAATASFDALIASEADPLLQAGVPAPVIAS-LQQWLARPENAALAT 731

Query: 570 --QQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAKV 627
             Q+ ++ LL Q     A+ A P      L G+ VV+TG+   L+R+ AK  L++LGAKV
Sbjct: 732 AAQRAMDALLAQLPQADAVQAGP------LDGQTVVITGTLAALTRDAAKQRLESLGAKV 785

Query: 628 TGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFL 668
            GSVSK T  + AGE AGSKL KA  LG++++DE  L+ FL
Sbjct: 786 AGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFL 826