Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., NAD-dependent DNA ligase from Pseudomonas syringae pv. syringae B728a

 Score =  620 bits (1599), Expect = 0.0
 Identities = 357/710 (50%), Positives = 453/710 (63%), Gaps = 46/710 (6%)

Query: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
           M  V  R+ ELR  L +H  RY+V D PSIPD EYDRL  EL  LEA +P L++ DSP+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQ 60

Query: 61  RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRI--PA---------VQHSA 109
           RVG   L AF  V HE+PMLSL NAF++ ++  F RR+T+ +  PA         VQ+S 
Sbjct: 61  RVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQYS- 119

Query: 110 FCCEPKLDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLE 169
             CEPKLDGLAVSLLY +G L R ATRGDGTTGE+I+ NVRT+++IPL+LQG  +P  LE
Sbjct: 120 --CEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 170 VRGEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGV 229
           VRGEVFM KAGFE LNA  L+ G K F NPRNAAAGSLRQLDSKITA RPL F  Y +G 
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 230 IEGGELATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVI 289
               E+A +H      LK WG+P+  E KL   + E  A+Y+DI +RR +L YEIDGVV 
Sbjct: 238 TSA-EIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLTLTYEIDGVVF 296

Query: 290 KVDDIQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVG 349
           KV+++  Q  LGF AR PRWAIA+KFPA EELT L DVEFQVGRTGA+TPVA+L+PV V 
Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356

Query: 350 GVTVSNATLHNADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCP 409
           GV V+NATLHN DE+ RLG+M+GDTV+IRRAGDVIPQ+V VV ERRPENA+++  P  CP
Sbjct: 357 GVMVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTCP 416

Query: 410 VCQSDVER------------VEGEAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDK 457
           VC S VER            V   AV RC G L C AQ K+A+ H+VSR+AMD+EGLGDK
Sbjct: 417 VCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGDK 476

Query: 458 VIEQLVDREMVSTPADLFRLRAGELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGI 517
            IEQLVD +++ +PADL++L+  ++  LE     S+  ++ A+  ++Q TL +F+YALGI
Sbjct: 477 TIEQLVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPTLARFIYALGI 536

Query: 518 REVGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELL 577
            +VGE TA  LA+   SLE ++QA  E    +PDVG+ VA  +++FF  + N+ VI+ LL
Sbjct: 537 PDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIRSFFEDEHNRSVIDALL 596

Query: 578 -----------EQGITWPALTAAPVAVDS--------ALAGKIVVLTGSFTQLSRNDAKA 618
                      E G  + A T     +D           A K+    G+   +   D   
Sbjct: 597 GECGLQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISADWLD 656

Query: 619 ALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFL 668
             QAL  K   SV    D     E A +  A+  + G+    E+  +E L
Sbjct: 657 MRQALPEKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGL 706



 Score = 89.7 bits (221), Expect = 5e-22
 Identities = 68/171 (39%), Positives = 92/171 (53%), Gaps = 10/171 (5%)

Query: 503 AKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQAS-LEQFIEVPDVGVVVASHLQ 561
           A  TTL   +  L I  VG   A  LA  F +LEAI  A  L+    +P+     A  ++
Sbjct: 614 AASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISADWLDMRQALPEKQ---AKSVR 670

Query: 562 AFFAQDRNQQ----VINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAK 617
            FF    N +    +  +L + G+ W +       +   LAG+  VLTGS  ++SR+ AK
Sbjct: 671 DFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLP--LAGQTWVLTGSLERMSRDVAK 728

Query: 618 AALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFL 668
             L++LGAKV+GSVS  T  V AG  AGSKL KA ELG+ V DE AL++ L
Sbjct: 729 EKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779