Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., NAD-dependent DNA ligase LigA from Synechococcus elongatus PCC 7942

 Score =  575 bits (1482), Expect = e-168
 Identities = 323/667 (48%), Positives = 425/667 (63%), Gaps = 7/667 (1%)

Query: 4   VAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVG 63
           +AQR +ELR+ L +    YYV D P + DA YDRL REL +LE  HP L++ DSP+ RVG
Sbjct: 13  IAQRASELRQLLQQASYAYYVLDQPVMEDAVYDRLYRELQDLEQQHPSLITPDSPTQRVG 72

Query: 64  GRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA-FCCEPKLDGLAVS 122
            +P   FESV H IP+ SL+NAFD  EL S+ +R     P V   A + CE K+DG A++
Sbjct: 73  EQPATGFESVQHRIPLYSLENAFDAEELRSWDQRWRKLAPDVPADAGYVCELKIDGAAIA 132

Query: 123 LLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGFE 182
           L YENG+L R ATRGDGT GE IT N+RTIKSIPLRLQ    P  LEVRGE F+    F+
Sbjct: 133 LSYENGLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEWLEVRGEAFLSLTRFK 192

Query: 183 ALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSV-GVIEGGELATSHYQ 241
            LN    K GE  F NPRNAAAG+LRQLD +I A+R L F+AYS+ G  +   L  +   
Sbjct: 193 QLNTEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSIQGPNDWANLDQAASL 252

Query: 242 RFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLG 301
             LQ  G+ +   P  +   +LAEV+ ++ D   RR+ L Y  DGVV+K+   +LQ+ LG
Sbjct: 253 DCLQSLGFRVE--PHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKLQSRRLQDELG 310

Query: 302 FVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNA 361
           F  + PRWAIA K+PA E  T L  V  QVGRTGA+TPVA+  PV + G TVS ATLHNA
Sbjct: 311 FTQKFPRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGTTVSRATLHNA 370

Query: 362 DEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGE 421
           D +  L + +GDT+V+R+AG++IP++V V+ + RP +AK +V P +CP C   V+R E E
Sbjct: 371 DRLRELDLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKPVVLPEKCPECGQPVQRPEEE 430

Query: 422 AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAGE 481
           AV RC     C A  + AL H+ SR A+D+EGLG+K+++QLV + +V+  ADL+RL A  
Sbjct: 431 AVTRCVNS-TCPAIVRGALTHWASRDALDIEGLGEKLVDQLVSKGLVNAIADLYRLDAPL 489

Query: 482 LTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQA 541
           L  LER G KSAQN++ A+ K++Q    + LY LGIR VG   A NLA  F S EA+ QA
Sbjct: 490 LASLERFGEKSAQNLVQAIAKSRQQPWSRVLYGLGIRHVGSVNAKNLAATFTSAEALAQA 549

Query: 542 SLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKI 601
           + ++   V  +G  +A  +  +F    NQ +I  L + G+      A+P +   ALAG+ 
Sbjct: 550 TPDELAAVYGIGSEIADAVHQWFTVATNQNLIAALEQAGLQLHGEAASPRS--QALAGQT 607

Query: 602 VVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDE 661
            VLTG+   LSRN+AKA ++A G KV+GSVSK T  V AGE AGSKL KA  L I   +E
Sbjct: 608 FVLTGTLPTLSRNEAKALIEAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAIALNIPQLNE 667

Query: 662 QALIEFL 668
             L++ L
Sbjct: 668 TQLLDLL 674