Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., DNA ligase (NAD(+)) (RefSeq) from Shewanella amazonensis SB2B

 Score =  840 bits (2169), Expect = 0.0
 Identities = 430/670 (64%), Positives = 523/670 (78%), Gaps = 9/670 (1%)

Query: 4   VAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVG 63
           V   +  L   ++ H + YYV+DAPSIPDAEYDRLM +L  LEA +P+    DSP+ RVG
Sbjct: 14  VKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYPQFAEPDSPTQRVG 73

Query: 64  GRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAVSL 123
           G  L+ FE V H  PMLSLDNAF++ +  +F +R+TD++ +     +C EPKLDGLAVSL
Sbjct: 74  GAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRLTDKVGS---QVYCAEPKLDGLAVSL 130

Query: 124 LYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGFEA 183
           +Y NGVL RAATRGDG  GE+I+ N+RTIKS+PLRLQG D P  +EVRGEVFMP+A FEA
Sbjct: 131 IYRNGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEVRGEVFMPRAAFEA 190

Query: 184 LNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGE-----LATS 238
           LN RA  KG+K FVNPRNAAAGSLRQLDSKITA+R LAFYAY++GV++        LA +
Sbjct: 191 LNDRARAKGDKLFVNPRNAAAGSLRQLDSKITAERSLAFYAYALGVVQDDNGADLVLAPT 250

Query: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298
           H  +  +L  +GLP+  E KL   LAEV A+Y DIL+RR  LA+EIDGVVIKV+DI+ Q+
Sbjct: 251 HKGQLERLTAFGLPVSKEVKLCEGLAEVMAYYADILKRRDELAFEIDGVVIKVNDIEAQQ 310

Query: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358
           +LGFVARAPRWAIA+KFPAQEE+T+L  V+FQVGRTGA+TPVA+L+PVFVGGVTVSNATL
Sbjct: 311 QLGFVARAPRWAIAFKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATL 370

Query: 359 HNADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERV 418
           HN DEI RLGV +GDTV+IRRAGDVIPQIV+VV ERRP+ A+ I+FP  CPVC S VER+
Sbjct: 371 HNGDEIARLGVKIGDTVIIRRAGDVIPQIVAVVPERRPDEAQDILFPDNCPVCGSLVERI 430

Query: 419 EGEAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLR 478
           EGEAVARCSGGL C+AQR+EA+KHF SRKAM ++G+GDKV+EQL+D+E+V +PADLF+L 
Sbjct: 431 EGEAVARCSGGLFCEAQRREAIKHFASRKAMYIDGMGDKVVEQLIDKELVESPADLFKLN 490

Query: 479 AGELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAI 538
             +LT+LERMG KSA N++ A+ +AK TTLPKFLYALGIREVGEATA NLA+HF SLEAI
Sbjct: 491 VSKLTMLERMGTKSATNLVAAIEEAKTTTLPKFLYALGIREVGEATAANLAKHFRSLEAI 550

Query: 539 QQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALA 598
           + A ++  I+V DVG VVA H+  FFAQ  N +VI+ L+  G+ WPA+   P A    L 
Sbjct: 551 RDADVDALIQVEDVGTVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAI-EKPSADAQPLL 609

Query: 599 GKIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQV 658
           G+  VLTG+ T L R +AKA L+ALGAKV GSVSKNT  V AGEAAGSKLAKA ELGI V
Sbjct: 610 GQTWVLTGTLTSLGRTEAKAKLEALGAKVAGSVSKNTHCVVAGEAAGSKLAKAQELGIPV 669

Query: 659 FDEQALIEFL 668
            DE  LIE +
Sbjct: 670 LDEAGLIELI 679