Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 698 a.a., DNA ligase (NAD+) (NCBI) from Rhodospirillum rubrum S1H

 Score =  588 bits (1517), Expect = e-172
 Identities = 330/681 (48%), Positives = 421/681 (61%), Gaps = 22/681 (3%)

Query: 2   SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
           ++ A+ L  L   +  H   Y+ +DAP I D EYD L+R   E+EAA PEL+  DSPS  
Sbjct: 10  AEAARELERLAAEIARHDRLYHQQDAPEITDGEYDALVRRNNEIEAAFPELVRGDSPSAH 69

Query: 62  VGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--AFCCEPKLDGL 119
           VG  P + F  V H +PMLSL N F D E   F +R+   +     +  ++  EPK+DGL
Sbjct: 70  VGAAPAEGFAKVTHALPMLSLGNVFSDDEAREFDQRIRRFLSLDGETTISYVAEPKIDGL 129

Query: 120 AVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQG-ADFPTRLEVRGEVFMPK 178
           + S  YENGV  RAATRGDGTTGE+IT N+ T+  +P RL G    P  LEVRGEVFM K
Sbjct: 130 SFSARYENGVYRRAATRGDGTTGEDITANLATLTDLPQRLTGDGPVPEVLEVRGEVFMTK 189

Query: 179 AGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATS 238
           A F ALN R +  G K F NPRNAAAGSLRQLD +IT  R L+ +AY+ G ++G E+  S
Sbjct: 190 ADFRALNQRQIDAGAKPFANPRNAAAGSLRQLDPEITRSRSLSLFAYASGEVKGLEVE-S 248

Query: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298
           H+    +LK WG P+ P+T+    + ++      +  +R +L Y+IDGVV KVD +  Q+
Sbjct: 249 HHAFLERLKTWGFPVNPQTRPCQGVEDLIEATHALALQRAALDYDIDGVVYKVDRVDWQK 308

Query: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358
           RLGFV+RAPRWAIA KFPA+   T +  ++ QVGRTG +TPVA LEPV VGGV V  ATL
Sbjct: 309 RLGFVSRAPRWAIARKFPAERAQTTVKAIQIQVGRTGTLTPVAILEPVTVGGVVVGRATL 368

Query: 359 HNADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERV 418
           HN DEI R  V +GD V I+RAGDVIPQ+V V+L++RP ++   VFP  CPVC S   R 
Sbjct: 369 HNEDEIARKDVRIGDMVTIQRAGDVIPQVVEVLLDQRPADSAPFVFPETCPVCGSHAVRQ 428

Query: 419 EGEAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLR 478
           EGE   RC+GGLIC AQ  E LKHFVSR A D+EGLG K IE   +  +++ PAD+F L 
Sbjct: 429 EGEVARRCAGGLICSAQAVERLKHFVSRDAFDIEGLGGKHIETFHNEGLITQPADIFALE 488

Query: 479 AGE--------LTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQ 530
           A +        L   E  GPKSA+N+  A+   K   L +F+YALGIR+VG+ATA  LA 
Sbjct: 489 AKDNEPGALQHLRSREGWGPKSAENLFKAITARKTIPLDRFIYALGIRQVGQATARLLAG 548

Query: 531 HFLSLEAIQQASLEQFIE----------VPDVGVVVASHLQAFFAQDRNQQVINELLEQG 580
           H+ S  A ++A  E   E          +  +G  VA  L AFF ++ N+  ++ L++ G
Sbjct: 549 HYASFAAWRKAMDEAQTEGSEAFADLQNIESIGPSVARDLVAFFGEEHNRAALDALIDAG 608

Query: 581 ITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFA 640
           +          A DS LAGK VV TG+   +SR +AKA   ALGAKVTGSVS  TD V  
Sbjct: 609 VEVLDFARPQAAGDSPLAGKTVVFTGTLDTMSRGEAKARALALGAKVTGSVSAKTDYVVV 668

Query: 641 GEAAGSKLAKATELGIQVFDE 661
           G  AGSK  KA ELG+ V  E
Sbjct: 669 GADAGSKEKKARELGLTVLSE 689