Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., NAD-dependent DNA ligase LigA from Rhodopseudomonas palustris CGA009

 Score =  575 bits (1482), Expect = e-168
 Identities = 328/686 (47%), Positives = 426/686 (62%), Gaps = 34/686 (4%)

Query: 8   LTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVGGRPL 67
           L  LR  +  H   YY +DAP I DA+YD L R L  +E   PEL+++ SP+  VG  P 
Sbjct: 23  LMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNASSPTQTVGAAPA 82

Query: 68  DAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAVSLLYEN 127
             F  V H +PMLSL NAF D E+  F  R+   +      A   EPK+DGL++SL YEN
Sbjct: 83  RGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLDDVPAIVAEPKIDGLSLSLRYEN 142

Query: 128 GVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGFEALNAR 187
           G L RAATRGDG TGE++T NVRTIK +P  L+G   P   E+RGEV+M K  F ALN R
Sbjct: 143 GELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPATCELRGEVYMLKQDFLALNKR 202

Query: 188 ALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHYQRFLQ-L 246
             +  E  F NPRN+AAGSLRQ D  +TA RPL F+AY+ G +    +      + LQ L
Sbjct: 203 QEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFFAYAWGEMSDYPMEEPTQHKMLQWL 262

Query: 247 KGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLGFVARA 306
              G  + PE  L  S+ +  AFY+ I ++R SL Y+IDGVV KVD +  QERLGFV+R+
Sbjct: 263 DHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVYKVDRLDYQERLGFVSRS 322

Query: 307 PRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 366
           PRWAIA+KF A++  T+L  ++ QVGRTGA+TPVA+L+PV VGGV V NATLHN D I+ 
Sbjct: 323 PRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQPVTVGGVVVQNATLHNEDYIKG 382

Query: 367 LG-----------VMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDV 415
           +G           +  GDTVV++RAGDVIPQIVSVV+E+RP  A+   FP +CPVC S  
Sbjct: 383 IGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMEKRPAGAEPYHFPHKCPVCGSHA 442

Query: 416 ERVEGEAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLF 475
            R EGEAV RC+G LIC AQ  E LKHFVSR A D++GLG+K IE   +R  V  PAD+F
Sbjct: 443 VREEGEAVWRCTGALICPAQAVERLKHFVSRLAFDIDGLGEKQIELFHERGWVQEPADIF 502

Query: 476 RLRAG----ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQH 531
            L+A     +L  LE  G  S +N+  A++  +   L + ++ALGIR VGE  A  LA+H
Sbjct: 503 TLKARNAELKLEQLEGYGETSVRNLFAAIDARRSIELHRLVFALGIRHVGEGNAKLLARH 562

Query: 532 FLSLEAIQQA----------------SLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINE 575
           + +L+A   A                + +    +  +G VVA  +  FFA++RN + ++ 
Sbjct: 563 YGTLDAFLSAMRAAADAQTEEGNTSEAYQDLDNIAGIGDVVAEAVVEFFAEERNIKALDA 622

Query: 576 LLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNT 635
           LL +      L A     D+A+AGK VV TGS ++ +R++AKAA + LGAKV GSVSK T
Sbjct: 623 LLAE--LTEVLPAEQARRDTAVAGKTVVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKT 680

Query: 636 DMVFAGEAAGSKLAKATELGIQVFDE 661
           D V AGE AGSKL KA +LG+ V  E
Sbjct: 681 DYVVAGEDAGSKLTKAKDLGVTVLTE 706