Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., DNA ligase, NAD-dependent (RefSeq) from Shewanella loihica PV-4

 Score =  868 bits (2242), Expect = 0.0
 Identities = 439/671 (65%), Positives = 536/671 (79%), Gaps = 7/671 (1%)

Query: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
           M  +   + +L   L++H  RYYV+DAPSIPDAEYDRLMR L ELEA HPEL  +DSP+ 
Sbjct: 1   MQAIQDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQ 60

Query: 61  RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
           RVGG  L  F  V H  PMLSLDN F + E  +FY+R+ D++P     AFCCEPKLDGLA
Sbjct: 61  RVGGEALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRVGDKLPDTP--AFCCEPKLDGLA 118

Query: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
           VS+LY +GV  RAATRGDGT GE+ITENVRTIKS+PLRL+G+ FP  LEVRGEVFMPKA 
Sbjct: 119 VSILYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVFMPKAA 178

Query: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGE--LATS 238
           FEA+N +A  KGEK FVNPRNAAAGSLRQLDSKITA R LAFYAY++GV+E     LA S
Sbjct: 179 FEAVNDKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETWPLAAS 238

Query: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298
           H+++ +QLK WG P+  E K+   +  V A+YQDIL RR  LAYEIDGVV+KV+DI  Q+
Sbjct: 239 HFEQLVQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVLKVNDIAQQQ 298

Query: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358
            LGFVA+APRWA AYKFPAQEE+T L  V+FQVGRTGA+TPVA+L+PVFVGGVTVSNATL
Sbjct: 299 TLGFVAKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTVSNATL 358

Query: 359 HNADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERV 418
           HNADEI RLGVM+GD+V+IRRAGDVIPQ+V+VV E+RP +A++I FP +CPVC SDVERV
Sbjct: 359 HNADEIARLGVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPPQCPVCGSDVERV 418

Query: 419 EGEAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLR 478
           EGEAVARC+GGL+C+AQRKEA+KHF SRKA+D++G+GDKV+EQL+D+E+V++PADLF+L 
Sbjct: 419 EGEAVARCTGGLVCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVASPADLFKLT 478

Query: 479 AGELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAI 538
           A  +T+L+RMG KSA N+++AL  AKQTT  +FLY+LGIREVGEATA NLA +F +LE +
Sbjct: 479 ASAITMLDRMGMKSATNLVNALEAAKQTTFARFLYSLGIREVGEATAANLANYFKTLEHL 538

Query: 539 QQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDS-AL 597
           +QA  E F++V DVGV+VA HL  FF Q  N +VI+ LL+ G+ WP +    VA ++ +L
Sbjct: 539 KQADAETFMKVDDVGVIVAQHLVHFFEQPHNLEVIDGLLQAGVHWPDI--EEVAEEALSL 596

Query: 598 AGKIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQ 657
            G+  VLTG+ TQL+RNDAKA LQALGAKV GSVSKNTD + AGEAAGSKL KA ELG++
Sbjct: 597 KGQTWVLTGTLTQLNRNDAKAKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVK 656

Query: 658 VFDEQALIEFL 668
           V DE  L+  L
Sbjct: 657 VIDEAELLAIL 667