Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 689 a.a., DNA ligase, NAD-dependent (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  865 bits (2236), Expect = 0.0
 Identities = 437/660 (66%), Positives = 538/660 (81%), Gaps = 6/660 (0%)

Query: 11  LRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVGGRPLDAF 70
           L ++L+EH +RYYV+DAPSI D+EYDRLM++L +LEA +P+ + +DSP+ RVGG  L  F
Sbjct: 30  LSQSLNEHNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLADSPTQRVGGLALAKF 89

Query: 71  ESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAVSLLYENGVL 130
           E + H  PMLSLDNAFD+ +  +F++R++DR+  V   +FCCEPKLDGLAVS+LY NGVL
Sbjct: 90  EQITHLKPMLSLDNAFDEADFTAFHKRVSDRVGQV---SFCCEPKLDGLAVSILYRNGVL 146

Query: 131 TRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGFEALNARALK 190
            RAATRGDGT GE+ITENV+TIKSIPLRL+G ++P  +EVRGE FMPKA FEALN RA  
Sbjct: 147 ERAATRGDGTVGEDITENVKTIKSIPLRLRGNNYPELVEVRGEAFMPKAAFEALNERARL 206

Query: 191 KGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGG--ELATSHYQRFLQLKG 248
           K +KQFVNPRNAAAGSLRQLDSKITA R L+FYAY++GV+E    ELA +HY++  QLK 
Sbjct: 207 KDDKQFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPSSHELAKTHYEQLQQLKS 266

Query: 249 WGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLGFVARAPR 308
           WGLP+  E K+   L +V A+Y+DIL RR  L +EIDGVV+KV+DI  Q+ LGFVA++PR
Sbjct: 267 WGLPVSSEIKVCDELNQVFAYYKDILTRRSDLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 326

Query: 309 WAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLG 368
           WAIAYKFPAQEE+TLL  V+FQVGRTGA+TPVA+L+PVFVGGVTVSNATLHNADEIERLG
Sbjct: 327 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 386

Query: 369 VMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGEAVARCSG 428
           VMVGDTV+IRRAGDVIPQIV++V ERR E+A++IVFP  CPVC S VER+EGEAVARCSG
Sbjct: 387 VMVGDTVIIRRAGDVIPQIVAIVPERRSEDAQAIVFPQHCPVCGSLVERLEGEAVARCSG 446

Query: 429 GLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAGELTILERM 488
           GL C+AQRKEA+KHF SRKA+D++G+GDK++EQL+D+E+V +PADLF+L A  +T+L+RM
Sbjct: 447 GLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLTASMMTMLDRM 506

Query: 489 GPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQASLEQFIE 548
           G KSA N+  A+  AK TTLP+FLYALGIREVGEATA NLA HF SL+A++ A++EQ IE
Sbjct: 507 GMKSATNLALAIEAAKTTTLPRFLYALGIREVGEATAANLAAHFGSLDALRIATIEQLIE 566

Query: 549 VPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSF 608
           V D+G VVA H+  FFAQ  N +VI+ L+  G+ WPA+  AP A +  L G+  VLTG+ 
Sbjct: 567 VEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAI-EAPSADEQPLKGQTWVLTGTL 625

Query: 609 TQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFL 668
            QL+RNDAKA LQ LGAKV GSVSKNTD + AGEAAGSKLAKA ELG++V  E  L+  L
Sbjct: 626 NQLNRNDAKAQLQVLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685