Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 691 a.a., DNA ligase, NAD-dependent (RefSeq) from Shewanella sp. ANA-3

 Score =  868 bits (2244), Expect = 0.0
 Identities = 438/660 (66%), Positives = 538/660 (81%), Gaps = 6/660 (0%)

Query: 11  LRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVGGRPLDAF 70
           L ++L+EH +RYYV+DAPSI D+EYDRLM+ L +LEA +P+ +++DSP+ RVGG  L  F
Sbjct: 32  LCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVGGMALAKF 91

Query: 71  ESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAVSLLYENGVL 130
           E + H  PMLSLDNAFD+ +  +F++R++DR+  V   +FCCEPKLDGLAVS+LY NGVL
Sbjct: 92  EQITHLKPMLSLDNAFDEADFSAFHKRVSDRVGEV---SFCCEPKLDGLAVSILYRNGVL 148

Query: 131 TRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGFEALNARALK 190
            RAATRGDGT GE+ITENV+TIKSIPL+L+G ++P  +EVRGE FMPKA FEALN RA  
Sbjct: 149 ERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEAFMPKAAFEALNERARL 208

Query: 191 KGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIE--GGELATSHYQRFLQLKG 248
           K EK FVNPRNAAAGSLRQLDSKITA R L+FYAY++GV+E    ELA +HY++  QLK 
Sbjct: 209 KDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTSHELAKTHYEQLQQLKS 268

Query: 249 WGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLGFVARAPR 308
           WGLP+  E K+   L++V A+YQDIL RR  L +EIDGVV+KV+DI  Q+ LGFVA++PR
Sbjct: 269 WGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 328

Query: 309 WAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLG 368
           WAIAYKFPAQEE+TLL  V+FQVGRTGA+TPVA+L+PVFVGGVTVSNATLHNADEI RLG
Sbjct: 329 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIARLG 388

Query: 369 VMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGEAVARCSG 428
           VMVGDTV+IRRAGDVIPQIV++V ERRPE+AK+I FP  CPVC S VER+EGEAVARCSG
Sbjct: 389 VMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAIAFPQHCPVCGSLVERLEGEAVARCSG 448

Query: 429 GLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAGELTILERM 488
           GL C+AQRKEA+KHF SRKA+D++G+GDK++EQL+D+E+V +PADLF+L A  +T+L+RM
Sbjct: 449 GLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLTASMMTMLDRM 508

Query: 489 GPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQASLEQFIE 548
           G KSA N+  A+  AK TTLP+FLYALGIREVGE TA NLA HF SLEA++ A++EQ I+
Sbjct: 509 GIKSATNLALAIEAAKTTTLPRFLYALGIREVGETTAANLATHFGSLEALRVATIEQLIQ 568

Query: 549 VPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSF 608
           V D+G VVA H+  FFAQ  N +VI+ L+  G+ WPA+ AAP A +  L G+  VLTG+ 
Sbjct: 569 VEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAI-AAPSADEQPLKGQTWVLTGTL 627

Query: 609 TQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFL 668
            QL+RNDAKA LQALGAKV GSVSKNTD + AGEAAGSKLAKA ELG++V  E  L+  L
Sbjct: 628 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 687