Pairwise Alignments

Query, 397 a.a., 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase (RefSeq) from Shewanella loihica PV-4

 Score =  211 bits (537), Expect = 3e-59
 Identities = 133/392 (33%), Positives = 205/392 (52%), Gaps = 11/392 (2%)

Query: 12  SGNKFDILVVGGGMVGAAAALGFARQGRKVAVIDSGAPHAFEPSQPMDVRVSAISQTSVG 71
           S   +D+ ++GGGMVG A A+G  ++G +V VID+G   A   S    +RVSAI++ S  
Sbjct: 3   STQTYDVAIIGGGMVGLATAIGLGQEGLRVVVIDAGETQAV--SGEARLRVSAINKASQR 60

Query: 72  LLEELGAWSSVVGMRACPYRHLETWEHPEC-RTRFSCESLGLPQLGYMVENRVIQLALWQ 130
           LL  LGAW+ +   R  PY+ +  W+     +  F   S+    LG ++EN  I  AL  
Sbjct: 61  LLTHLGAWAYIDESRVGPYQKMAVWDKDSLGKIGFDAHSISEQTLGSIIENDNISHALAT 120

Query: 131 QFAAYPQLTLMCPEQLAQLNVSAEGCRVTLQSGAEIECDWVIGADGANSQVRNLVRIGVT 190
           +     ++T +   +L ++        +TL +G  +    VIGADGANS VR   +I +T
Sbjct: 121 RAGELSEITHLENHRLEKIAFGEREAWLTLDNGDNLSAALVIGADGANSWVREQCKIPMT 180

Query: 191 AWDYRQHCMLINVQTEQIQQETTWQQFFPTGPRSYLPL-GGNQASLVWYDTPQRIRKLSG 249
            WDY  H ++ +++TE     T  Q F   GP ++LPL   +  S+VW   P + + L  
Sbjct: 181 FWDYGHHAIVASIRTELPHNATARQVFLSDGPLAFLPLFEPSLCSIVWSVPPAKAQSLLE 240

Query: 250 LNPEQLRSEILQYFPAELGNIKV-LQHGAFPLTRRHAQQYVKNRCILIGDAAHTINPLAG 308
            +  Q    +   F  +LG   +  +  AFPL  R+A+ + ++R +L GDAAHTI+PLAG
Sbjct: 241 GDKVQFERSLTAAFDGKLGMCTLESEPQAFPLRMRYARHFARHRLVLAGDAAHTIHPLAG 300

Query: 309 QGVNLGFKDVAVLLAQTQEQAL------NQASFERYERCRRPDNLLMQTGMDLFYKTFSN 362
           QGVNLGF D A ++    E         + A+    ER R+ D L M   M+ F + F  
Sbjct: 301 QGVNLGFLDAAAIIETLSELKAKGKDLGDYANLRPLERWRKADALEMIAAMEGFKRLFEG 360

Query: 363 SFTPVRFVRNVALALAERSGPLKTQVLRYALG 394
           S    + +R++ L L +   P+KT  ++ A+G
Sbjct: 361 SNPVKKALRDLGLNLVDNLSPVKTLFMQQAMG 392