Pairwise Alignments

Query, 397 a.a., 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., oxidoreductase, FAD-binding, UbiH/Coq6 family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  221 bits (564), Expect = 2e-62
 Identities = 141/398 (35%), Positives = 210/398 (52%), Gaps = 16/398 (4%)

Query: 11  MSGNKFDILVVGGGMVGAAAALGFARQGRKVAVIDSGAPHAFEPSQPMDVRVSAISQTSV 70
           +S   +DI +VGGGMVG A A+G A+    V VID+G  H    S    +RVSAI++ S 
Sbjct: 2   LSSQAYDIAIVGGGMVGLATAIGLAQADLNVVVIDAG--HTEAVSGEPRLRVSAINKASQ 59

Query: 71  GLLEELGAWSSVVGMRACPYRHLETWEHPEC-RTRFSCESLGLPQLGYMVENRVIQLALW 129
            LLE LGAW  V   RA PY+ +  W+     +  F   S+  P LG ++EN  I  AL 
Sbjct: 60  RLLEHLGAWHYVDASRATPYQKMAVWDKDGFGKIAFDASSISEPSLGAIIENDAISYALA 119

Query: 130 QQFAAYPQLTLMCPEQLAQLNVSAEGCRVTLQSGAEIECD-----WVIGADGANSQVRNL 184
           ++ + +  +T +  ++L ++        +TL + A+ E +      VI ADGANS VR  
Sbjct: 120 KRASEFDNITHIENQRLERIAFGEREAWLTLANSADAEIESVSAALVIAADGANSWVREQ 179

Query: 185 VRIGVTAWDYRQHCMLINVQTEQIQQETTWQQFFPTGPRSYLPL-GGNQASLVWYDTPQR 243
            +I +T WDY  H ++  +++E     T  Q F   GP ++LPL   N  S+VW   P+R
Sbjct: 180 CKIPLTFWDYGHHAIVATIRSEMPHLATARQVFLQDGPLAFLPLYEDNLCSIVWSVPPER 239

Query: 244 IRKLSGLNPEQLRSEILQYFPAELGNIKV-LQHGAFPLTRRHAQQYVKNRCILIGDAAHT 302
             +L  ++  Q    +   F   LG  K+  +  AFPL  R+A+ + ++R +L GDAAHT
Sbjct: 240 ATELLAMDKVQFERNLTAAFDGRLGICKLESERQAFPLRMRYARHFARHRLVLAGDAAHT 299

Query: 303 INPLAGQGVNLGFKDVAVL------LAQTQEQALNQASFERYERCRRPDNLLMQTGMDLF 356
           I+PLAGQGVNLGF D A +      L Q  +   + A     ER R+ D + M   M+ F
Sbjct: 300 IHPLAGQGVNLGFLDAASIIEVISELQQAGKDIGDYAELRALERWRKADAMEMIAAMEGF 359

Query: 357 YKTFSNSFTPVRFVRNVALALAERSGPLKTQVLRYALG 394
            + F  S    + +R++ L L +    LKT  ++ A+G
Sbjct: 360 KRLFEGSNPVKKAIRDLGLNLVDNVAGLKTVFMQQAMG 397