Pairwise Alignments

Query, 474 a.a., tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., tRNA-i(6)A37 modification enzyme MiaB (NCBI) from Rhodospirillum rubrum S1H

 Score =  394 bits (1011), Expect = e-114
 Identities = 209/450 (46%), Positives = 280/450 (62%), Gaps = 6/450 (1%)

Query: 2   SKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFH 61
           ++KL IK++GCQMN YD+ +MAD++ A  GY+L    + AD+++LNTC IREKA EKVF 
Sbjct: 3   NRKLFIKSYGCQMNVYDAGRMADVM-APLGYDLVSEADGADLVILNTCHIREKAAEKVFS 61

Query: 62  QLGRWKTLKDKKPG----VVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQ 117
            LGR +  K+        +++ V GCVA  EG  +  RA  VD++ GPQ  HRLPEM+ +
Sbjct: 62  DLGRLRPFKEAMAAEGRRMLVAVAGCVAQAEGAELMARAKIVDMVVGPQAYHRLPEMVAK 121

Query: 118 SQTSDAPVMDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRP 177
            +     V+D  FP   KFD LP P+A GP+AF+S+ EGC K+CT+CVVPYTRG E SRP
Sbjct: 122 VERGAGRVLDTDFPIEPKFDFLPAPQAHGPSAFLSVQEGCDKFCTFCVVPYTRGAEYSRP 181

Query: 178 MDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFT 237
           + DVL E A LAE GVRE+ LLGQNVNAY G   DG       L R +A I G+ R+R+T
Sbjct: 182 VADVLREAALLAEGGVREITLLGQNVNAYHGEAPDGRTWGLGRLARALAEIPGVARLRYT 241

Query: 238 TSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKAR 297
           TSHP +  DD+IA + +   L  F+HLPVQSGSDRIL  M R H    Y+ II +LR AR
Sbjct: 242 TSHPRDVDDDLIAAHREVAALTPFIHLPVQSGSDRILAAMNRGHDVEGYRRIIDRLRAAR 301

Query: 298 PDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEV 357
            D+  SSDFIVGFPGE+++DFQ T+ LI +V F  ++SF +SPRPGTPAA     L E  
Sbjct: 302 DDMAFSSDFIVGFPGESERDFQATLALIDEVRFIQAYSFKYSPRPGTPAAALSAQLPEAE 361

Query: 358 KKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPD 417
           K  RL  LQ ++      +++  +G    +L++ P  +   +L GR+   + V+ E    
Sbjct: 362 KSARLIALQARLVEIQQAFNQACVGRPMDVLLDRPG-RHAGQLVGRSPWMQPVHLEAPAA 420

Query: 418 LIGQFVDVKIVDVFPNSLRGELLRTEQEMN 447
           L+G    V +     NSL   L+     M+
Sbjct: 421 LLGTLAPVVVETATSNSLAARLVEGNSSMS 450