Pairwise Alignments

Query, 474 a.a., tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  147 bits (370), Expect = 1e-39
 Identities = 128/451 (28%), Positives = 210/451 (46%), Gaps = 51/451 (11%)

Query: 11  GCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLK 70
           GC  N  DS ++   L   +GYE+T   + AD++++NTC   + A E+    +   + L+
Sbjct: 46  GCPKNLVDSERILTQLRI-DGYEVTNSYDNADLVIVNTCGFIDAAVEESLDAVR--EALE 102

Query: 71  DKKPGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDAPVMDISF 130
           +   G VI V GC+  +E + IR+  P V  I GP +   + + + +          +  
Sbjct: 103 EN--GKVI-VTGCLGAKE-NQIREVHPDVLEITGPHSYEAVLKHVHKY---------VPK 149

Query: 131 PEIEKFDRLPEPRAEGPT----AFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIA 186
           PE   F  L        T    A++ I EGC   CT+C++P  RG+  SR    VL E  
Sbjct: 150 PEHNPFTSLIPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRGAGSVLDEAK 209

Query: 187 QLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDR--------IRFTT 238
           +L E GV+E+ ++ Q+ +AY      GG   F   + +   I  + R        +R   
Sbjct: 210 RLVEAGVQEILVVSQDTSAY--GKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWVRLHY 267

Query: 239 SHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARP 298
            +P  + DD+I +  +   ++ +L +P+Q  S RIL MMKRP         I++ R+  P
Sbjct: 268 IYPYPWVDDLIPLMAEGL-ILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQRWREICP 326

Query: 299 DIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVK 358
           D+ I S FIVGFPGET++DF+  +  +R+   D    F +S   G  A      +SEEVK
Sbjct: 327 DLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAELISEEVK 386

Query: 359 KERLY---ELQQQINSQAM-----RYSRLML------GTEQRILVEGPSKKDLMELRGRT 404
           ++R +   E+Q +I+++ +     R   +++      G   R   + P    ++ + G T
Sbjct: 387 EDRYHRFMEVQAEISAERLARFVGRTMDILIDDVDEEGAIGRSFADAPEIDGMVFINGET 446

Query: 405 E------NNRVVNFEGSPDLIGQFVDVKIVD 429
           E         V+      DL  + VD    D
Sbjct: 447 ELEPGMLVRAVITHSDEHDLWAELVDADAED 477