Pairwise Alignments

Query, 858 a.a., leucine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 883 a.a., valyl-tRNA synthetase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  127 bits (318), Expect = 4e-33
 Identities = 108/420 (25%), Positives = 164/420 (39%), Gaps = 114/420 (27%)

Query: 5   YNPQDIEHKVQQHWDNNKTFVVSEDPNKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVVSR 64
           Y P+D+E + + HW+ NKTF    D   E F  +   P  +G LHMGH  N TI D++ R
Sbjct: 10  YEPRDVESRWRAHWEGNKTFTPDLDAPGEPFSIVIPPPNVTGALHMGHALNLTIQDILCR 69

Query: 65  FQRLQGKNVLQPIGWDAFGLPAENAAVKNNTAPA----------------PWTYENIEYM 108
             R +GK VL   G D  G+  +N   +                       W  E    +
Sbjct: 70  HARQKGKKVLWVPGTDHAGIATQNVVERGLAKEGKGRHDLGREKFIERVWEWREEYGTRI 129

Query: 109 KNQLKLLGFGYDWNREFATCRPEYYRWEQEFFTKLFAKGLVYKKTSSVNWCPNDQTVLAN 168
            NQ++ +G   DW RE  T      R  ++ F KL+  GL+YK    +NWC    T LA+
Sbjct: 130 LNQIRAMGASVDWTRERFTMDEGLSRAVRQVFVKLYDDGLIYKGDYIINWCNRCHTALAD 189

Query: 169 EQVEDGCCWRCDTPVEQKEIPQWFIKITAYAQELLDDLDNLDGWPEMVKTMQRNWIGRSE 228
           ++V+                              L   D+L  W                
Sbjct: 190 DEVDH-----------------------------LPRKDHL--W---------------- 202

Query: 229 GVELKFAVKGENTDLEVYTTRPDTLMGVTYVGIAAGHPLATKAAANNPALAAFIDECKNT 288
             +L++ +   + +L + TTRP+T+ G T V +   HP        +    AFI      
Sbjct: 203 --QLRYPLADGSGELVIATTRPETMFGDTAVCV---HP-------EDERYTAFI------ 244

Query: 289 KVAEAEIATMEKKGMATGLTAIHPLNGREVPIYIANFVLMDYGTGAVMAVPAHDQRDFEF 348
                            G     PL  RE+P+   N+V  ++GTGA+   P+HD  D+E 
Sbjct: 245 -----------------GKMVKLPLTDREIPVIADNYVDREFGTGALKVTPSHDHNDWEL 287

Query: 349 ATKYGLDIIPVIKPADGSELDVSEAAYTEKGVLFA-SGEFDGLDFQAAFNAIAAKLEAEG 407
             ++ L+ + VI                E GV+   +G + GL  +     + A L A+G
Sbjct: 288 GHRHKLEFLQVI---------------DENGVMNEHAGIYAGLTKEECRKRVVADLAAQG 332



 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 26/200 (13%)

Query: 605 DATGRQVEHSGMIKMSKSKNNGIDPQEMVDKYGADTVRLFMMFASPADMTLEWQESGVEG 664
           DA GR        KMSKS  N IDP EM+DKYG D++R  +   +     ++  E  +EG
Sbjct: 519 DAEGR--------KMSKSTGNVIDPLEMIDKYGTDSLRFTLAAFAAMGRDIKLSEERIEG 570

Query: 665 ANRFLRRVWKLVR---EHTELGQAPA-LDASALNADQKALRRDVHKTIAKVTDDVARRQT 720
              F+ ++W   R    +    + PA +D   +            + + + TD       
Sbjct: 571 YRHFVNKLWNAARFALMNLPDDEVPAPVDLDTVQGLHHRWILHRLEEMKESTDAAIVGYR 630

Query: 721 FNTAIAAIMELM--------NKLTKAPMTEAQDRA-----ILDEALKAITLMLYPITPHI 767
           FN A   +   +         +L K  M    +R      +L   L+    +L+PI P I
Sbjct: 631 FNDAAQGMYRFIWNEFCDWYLELIKPDMQAGGERKAAAQHVLLTVLRETLTLLHPIMPFI 690

Query: 768 CFEMWVAL-GQSNIDTASWP 786
             E+W AL G +  D A  P
Sbjct: 691 TCEIWAALPGNAGTDLAVQP 710



 Score = 29.6 bits (65), Expect = 8e-04
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 417 LRDWGVSRQRYWGAPIPMVTTED 439
           +RDW +SRQ +WG  IP  T  D
Sbjct: 399 IRDWCISRQIWWGHRIPAWTCGD 421



 Score = 26.9 bits (58), Expect = 0.005
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 163 QTVLANEQVED---GCCWRCDTPVEQKEIPQWFIKITAYA 199
           Q VL  E+  D   G C+RC + +E     QWF+  +  A
Sbjct: 331 QGVLVKEEELDHSVGHCYRCKSVIEPHVSTQWFVAASKMA 370