Pairwise Alignments

Query, 342 a.a., DNA polymerase III subunit delta from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., DNA polymerase III, delta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  193 bits (491), Expect = 5e-54
 Identities = 123/344 (35%), Positives = 187/344 (54%), Gaps = 7/344 (2%)

Query: 1   MRIYAEKLAESLHKTLYPIYLVFGNEPLLLQEAKTAIEKTAQAQGFLEKHRFSADAGLDW 60
           MR+Y ++L+  L+  L+  YL+FG++P LL+ +K  I + A+ QGF E+ +   + G +W
Sbjct: 1   MRVYPDQLSRHLNP-LHACYLIFGDDPWLLETSKDQIRQAAKRQGFEERVQLIQETGFNW 59

Query: 61  NAVYDCCQALSLFSSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQ 120
             +    QA+SLFSSR++IE+ +P +   A  +  L +L+     D+LL++ GPKL   Q
Sbjct: 60  GDLTQEWQAMSLFSSRRIIELTLPSAKPGADGSAALQSLLQTPSPDVLLILEGPKLASEQ 119

Query: 121 ENAAWFKTLAQQACWVNCLTPELSRLPQFVQQRC--FALGLKPDAEAVQMLAQWHEGNLF 178
            N+ WFKTL     ++ C TPE  +  +++  R   F L L+PDA A  ML   +EGNL 
Sbjct: 120 TNSKWFKTLDSLGIYLPCTTPEGDQFRRWLDSRIAHFKLNLQPDARA--MLYSLYEGNLL 177

Query: 179 ALAQSLEKLALLYPDGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLE 238
           A  Q+++ L LL P   +    L       + FT +   DALL  + + AQ +L QL  E
Sbjct: 178 AADQAMQLLQLLSPSKPIGADELSHYFEDQSRFTVFQLTDALLNNRQDSAQHMLAQLNGE 237

Query: 239 ESEPIILIRTAQKELTQLLKWQQERQQLGNLGSLFDRYRVWQNRRPLYSAALQRLPSRAL 298
            +   IL+    KEL  LL  + E+ Q   L SLF ++R+W  R+PLY  ALQRL    +
Sbjct: 238 GTAMPILLWALFKELQLLLSLKSEQAQGSPLNSLFGKHRIWDKRKPLYQTALQRLSLAQI 297

Query: 299 LRLVGILTQAELLAKTQYEQPVWPILQQLSLECCNPQANLPLPH 342
             ++   ++ EL  K Q     W  L  L L   +P+A+  L H
Sbjct: 298 EHMLAFASKLELNLK-QLGHEDWTGLSHLCL-LFDPKAHSHLAH 339