Pairwise Alignments

Query, 156 a.a., 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH from Vibrio cholerae E7946 ATCC 55056

Subject, 160 a.a., rRNA large subunit methyltransferase from Sinorhizobium meliloti 1021

 Score = 87.8 bits (216), Expect = 7e-23
 Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 8/161 (4%)

Query: 1   MKIQLIAVGTKMPKWVEEGFQEYRRRFPHDMP---LELVEI--TAGKRGKNADIARILQK 55
           M+I L AVG       ++    Y  RF    P   LEL  +  TA  R  NA+  +  ++
Sbjct: 1   MRIGLFAVGRLKAGPEKDLAGRYLDRFAKAGPAVGLELARVVETAESRAANAETRK--RE 58

Query: 56  EGEAMLAAVPKGNRIVTLDIPGKRWDTEELAVQLESWKLDG-RDVSILIGGPEGLAPACK 114
           E   +  A+  G+ +V LD  GK  D+E  A  L + +  G RD+ I IGG +GL PA  
Sbjct: 59  EAGQLEKALADGSLLVLLDERGKALDSEAFARLLGTLRDSGKRDLMIAIGGADGLDPALH 118

Query: 115 AAADQSWSLSPLTLPHPLVRVVMAESLYRAWSITTNHPYHR 155
           A AD   +L  +T PH LVR+++AE LYRA +I + HPYHR
Sbjct: 119 ARADAVLNLGKMTWPHQLVRILIAEQLYRAVTILSGHPYHR 159