Pairwise Alignments

Query, 156 a.a., 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH from Vibrio cholerae E7946 ATCC 55056

Subject, 156 a.a., putative ribosomal RNA large subunit methyltransferase from Phaeobacter inhibens DSM 17395

 Score = 90.5 bits (223), Expect = 1e-23
 Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 8/159 (5%)

Query: 1   MKIQLIAVGTKMPKWVEEGFQEYRRRFPHD---MPLELVEITAGKRGKNADIARILQKEG 57
           MK+    VG       ++   +Y  RF      + L    IT  +  KNA +A     E 
Sbjct: 1   MKVHFCVVGRLRASPEKQLIDDYIERFDRTGRALGLGPCRITEVEDKKNAGMAA----EA 56

Query: 58  EAMLAAVPKGNRIVTLDIPGKRWDTEELAVQLESWKLDGR-DVSILIGGPEGLAPACKAA 116
           E +  A+PKG  I TLD  GK   + + + +L  W+  GR DV+ +IGG +G+ P+ +A 
Sbjct: 57  ELLRKAIPKGAVICTLDERGKLLSSPDFSKRLADWRDTGRQDVAFVIGGADGIDPSLRAE 116

Query: 117 ADQSWSLSPLTLPHPLVRVVMAESLYRAWSITTNHPYHR 155
           AD S SL  +  PH LVRV++AE +YRA +I    PYHR
Sbjct: 117 ADFSISLGKMVWPHMLVRVLLAEQIYRAATILAGSPYHR 155