Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., penicillin-binding protein 2 from Pseudomonas stutzeri RCH2

 Score =  561 bits (1447), Expect = e-164
 Identities = 279/621 (44%), Positives = 406/621 (65%), Gaps = 13/621 (2%)

Query: 4   QHTPIRDHQAETHLFRNRAIVSFVGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIKVV 63
           Q   ++DH+ +  L R R +V    +L+ +G+LV  +Y +Q+ Q++ + T S +NR+ V 
Sbjct: 3   QPIQLKDHEKDAVLVRRRVVVGLAVVLLLIGVLVARMYYLQVVQFEYHSTLSENNRVHVQ 62

Query: 64  PIAPNRGLIFDRNGVLLAENRPVFNLEVIPEKVPNMEETIARLQQLIEISPEKLAAFEKE 123
           PI PNRGLIFDR G ++A+NRP F+L V  E+  +    +  + +++E+S E+   FEK 
Sbjct: 63  PIPPNRGLIFDRQGRVIADNRPSFSLTVTRERAGDWRTVLDAVVEVLELSEEERGLFEKR 122

Query: 124 RKQTRR-FNSVPLLTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVSR 182
             Q RR F  VP++ +L+++++A+ +VNQ + PGV V A L R+YP G    H +GYV R
Sbjct: 123 VLQGRRPFEPVPIMYELSEEQIARIAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGR 182

Query: 183 INDKDLERLDKEGKKANYQATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLKY 242
           IN++++++LD      NY  T  IGK GIE++YED LHG  GY+EVE N+RGRV+R LK 
Sbjct: 183 INEQEVKQLDP----VNYAGTHHIGKTGIEKFYEDELHGQVGYEEVETNARGRVLRVLKR 238

Query: 243 VPPIPGKDIVLNLDIELQLYAYKLLEGRRGSIVALDPKDNGVLAMASSPSYDPNAFVHGI 302
             PIPGKDI L+LD++LQ  A   L GRRG+IVAL P    V+AM S PS++PN FV GI
Sbjct: 239 TDPIPGKDITLSLDLDLQEAAEDALGGRRGAIVALLPDTGEVVAMVSQPSFNPNLFVTGI 298

Query: 303 SGKAYSDLLNDKRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGIITPNTTRNDPGYWRIP 362
           S K Y +L +   RPL NR   G+YPPGST+KP +AV+ L  G++TP T   DPG++++P
Sbjct: 299 SFKDYGELRDSIDRPLYNRVLRGLYPPGSTIKPMMAVAGLDAGVVTPTTRVFDPGFFQLP 358

Query: 363 NTDTRPFRDWLRWGHGRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGDLTGID 422
           N   + +R+W R G G VD+  ++  S DT+FY +A+ +G+D++  +M RFG G    +D
Sbjct: 359 NVQHK-YRNWNRSGDGWVDLDLAIARSNDTYFYDMAHKLGVDRMHDYMTRFGLGQRVSLD 417

Query: 423 IYEESKANMPTREWKMARHKVPWYQGDTIPVGIGQGYWTATPMQIAKATSVLVNHGKVIA 482
           ++EE+   MP+R+WK AR++ PWY G+T+ +GIGQGY  ATP+Q+A+AT+++   GK I 
Sbjct: 418 MHEETAGLMPSRDWKRARYRQPWYPGETVILGIGQGYMQATPLQLAQATALMATRGKWIR 477

Query: 483 PHLLRATIDNGEQFSTQKETEYTTYPPIDGVPKKYWDMAIHGMYLVNHGAKGTARRAFQN 542
           PHL R+          +   +    P I     ++W+ AIHGM  V HGA+GTAR+    
Sbjct: 478 PHLARS-------IGGELPVDPDPLPDIQLRDPRHWEHAIHGMEQVLHGARGTARKVGDT 530

Query: 543 MPYESAGKSGTAQVFGLAEGQKYNASELAEHLHDHALFTGFAPVKDPKVIVTFVLENGGG 602
             Y  AGKSGTAQV  + +G+KY++++LAE   DHALF  FAPV DPK+ V  ++ENG  
Sbjct: 531 SVYRIAGKSGTAQVVAIRQGEKYDSAKLAERHRDHALFVAFAPVHDPKIAVAVMVENGES 590

Query: 603 GSSNGAPVVRQIFDHVILGKK 623
           GS   APV +Q+ D  +L ++
Sbjct: 591 GSGVAAPVAKQVMDAWLLDEE 611