Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., peptidoglycan glycosyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score =  152 bits (385), Expect = 3e-41
 Identities = 165/624 (26%), Positives = 264/624 (42%), Gaps = 89/624 (14%)

Query: 9   RDHQAETHLFRNRAIVSFVGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIKVVPIAPN 68
           R+ +A+   +R   +V FV +L     LV     IQ+ +    +  S+   ++       
Sbjct: 7   RNQKAQPIPWRLYVVVGFVCLLFTS--LVGRAAYIQLIEPDKLRRESDMRTLRTSSSDVQ 64

Query: 69  RGLIFDRNGVLLAENRPVFNLEVIPEKV--PNMEETIARLQQLIEISPEKLAAFEKERKQ 126
           RGLI DRNG +LA + PV  +   P++V   N    + R Q L ++  EK  A     + 
Sbjct: 65  RGLITDRNGEMLAVSVPVQAVYADPKEVHDKNGFADMRRWQALADVLHEKPDALISRVQD 124

Query: 127 TRRFNSVPLLTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVSRINDK 186
                   L  Q+T   VA++ + Q K PGV +    +RYYP GE+   +IG V+ I+D 
Sbjct: 125 NPSKRFTYLKRQITP-AVAEY-IRQLKLPGVYLKPESRRYYPAGEITAQLIG-VTNIDDV 181

Query: 187 DLERLDKEGKKANYQATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLKYVPPI 246
            +E                    GIE  Y + L GT   Q+V  +  G V+  L  V   
Sbjct: 182 GIE--------------------GIESTYNNWLTGTPAKQKVRKSRDGHVVERLDIVQEG 221

Query: 247 PG-KDIVLNLDIELQLYAYKLL-------EGRRGSIVALDPKDNGVLAMASSPSYDPNAF 298
               D+VL++D  +Q  AY+ L       +   GS+V +D     VLAMA++PSY+PN  
Sbjct: 222 ESPNDLVLSIDQRIQQLAYRELKRATEMHQATSGSVVVIDVLTGEVLAMANTPSYNPN-- 279

Query: 299 VHGISGKAYSDLLNDKRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGII-TPNTTRNDPG 357
                  +  D  + K R   NR     + PGSTVKPF+  +AL+ G +   +     PG
Sbjct: 280 -------SRDDWQSFKMR---NRAVTDTFEPGSTVKPFVVAAALESGTVKASDIIPTSPG 329

Query: 358 YWRIPNTDTRPFRDWLRWGHGRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGD 417
           + R+     R   +     +G + + K L +S +    +++  M +++L       G G+
Sbjct: 330 WMRLGGRQVRDSNN-----YGDMSLTKILVKSSNMGVAKLSLGMPVEQLLGTYYSIGLGN 384

Query: 418 LTGIDIYEESKANMPTREWKMARHKVPWYQGDTIPVGIGQGYWTATPMQIAKATSVLVNH 477
            +GI +  ES          + + K  W   +   +  G G  T T +Q+A+  + L N 
Sbjct: 385 YSGIGLPGESAG--------LIQEKHRWSDFERATLAFGYGL-TTTTLQLARMYATLGNG 435

Query: 478 GKVIAPHLLRATIDNGEQFSTQKETEYTTYPPIDGVPKKYWDMAIHGMYLVNHGAKGTAR 537
           G +    +L+       Q     +        + GV ++                 GTAR
Sbjct: 436 GVLYPASILKLKQKPEGQQVLSPQVANNVMNMLVGVTEQ----------------GGTAR 479

Query: 538 RAFQNMPYESAGKSGTAQVFGLAEGQKYNASELAEHLHDHALFTGFAPVKDPKVIVTFVL 597
           +A  +  Y  AGK+GT++    A    Y    L       A F G APV +P++ +  V+
Sbjct: 480 KAHID-GYPVAGKTGTSR---KAVAGGYGDDYL-------ATFAGVAPVNNPRLAIAVVI 528

Query: 598 ENGGGGSSNGAPVVRQIFDHVILG 621
               G    G  V   +F  V+ G
Sbjct: 529 NEPKGDRYYGGDVSAPVFSKVMAG 552