Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., peptidoglycan glycosyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  150 bits (378), Expect = 2e-40
 Identities = 165/616 (26%), Positives = 259/616 (42%), Gaps = 91/616 (14%)

Query: 18  FRNRAIVSFVGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIKVVPIAPNRGLIFDRNG 77
           +R   +V FV +L     LV     IQI + +  +  S+   ++      +RG+I DRNG
Sbjct: 16  WRLYVVVGFVCLLFTS--LVGRAAYIQIIEPEKLRHESDMRTLRTTSNEVHRGMITDRNG 73

Query: 78  VLLAENRPVFNLEVIPEKVPNME--ETIARLQQLIEISPEKLAAFEKERKQTRRFNSVPL 135
            +LA + PV  +   P+ V +      + R Q L ++  E        R QT        
Sbjct: 74  EMLAVSVPVKAVYADPKVVHDRNGFADMRRWQALADVLHEPKEEI-LARVQTNPKKRFTY 132

Query: 136 LTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVSRINDKDLERLDKEG 195
           L +     VA++ + Q K PGV + A  +RYYP  E+   ++G ++ I+DK +E      
Sbjct: 133 LKRQVTPAVAEY-IKQLKLPGVYLKAESRRYYPTSEISAQLVG-LTNIDDKGIE------ 184

Query: 196 KKANYQATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLKYVPP-IPGKDIVLN 254
                         GIE  Y D L GT    +V  +  G V+  L  V       D+VL+
Sbjct: 185 --------------GIESTYNDWLTGTPTKHKVRKSRDGHVVERLDTVQTGESSNDLVLS 230

Query: 255 LDIELQLYAYKLL-------EGRRGSIVALDPKDNGVLAMASSPSYDPNAFVHGISGKAY 307
           +D  +Q  AY+ +       +    SIV LD     VLAMA++PSY+PN+          
Sbjct: 231 IDQRIQQLAYREIKRATEINQATSASIVVLDVHTGEVLAMANTPSYNPNS---------- 280

Query: 308 SDLLNDKRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGIITPNTT-RNDPGYWRIPNTDT 366
            D L   R  + NR     Y PGST+KPF+  +AL+ G I  +   +  PG  RI     
Sbjct: 281 RDNLQSYR--MRNRALTDAYEPGSTIKPFVVAAALEAGTIKEDQIFKTHPGRVRIGGKIV 338

Query: 367 RPFRDWLRWGHGRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGDLTGIDIYEE 426
           R  R+     +G + +   L  S +    QIA  M + +L  +    G G+ +GI     
Sbjct: 339 RDGRN-----YGDMSLGDVLVHSSNVGMTQIALSMPVQELLGYYQAMGLGNYSGI----- 388

Query: 427 SKANMPTREWKMARHKVPWYQGDTIPVGIGQGYWTATPMQIAKATSVLVNHGKVIAPHLL 486
              N+P     +   +  W   +   +  G    T TP+QIA+  ++L + G +    +L
Sbjct: 389 ---NLPGESAGLIHDRRRWSDFERATLSFGYAL-TVTPLQIARMYAMLGSGGVLYPSSIL 444

Query: 487 RATIDNGEQFSTQKETEYTTYPPIDGVPKKYWDMAIHGMYLVNHGAKGTARRAFQNMPYE 546
           +           + E E    P +          ++  M +      GTA++A  +  Y 
Sbjct: 445 K--------LKKEPEGEQVISPEV--------ARSVMQMLIGVTEPGGTAKKAHID-GYP 487

Query: 547 SAGKSGTA-QVFGLAEGQKYNASELAEHLHDHALFTGFAPVKDPKVIVTFVLENGGGGSS 605
            AGK+GTA +      G+ Y            ALF G APV +P++ +  V+    G   
Sbjct: 488 VAGKTGTARKAVAGGYGEDY-----------VALFAGVAPVHNPRLAMVVVVNEPKGDRY 536

Query: 606 NGAPVVRQIFDHVILG 621
            G  V   +F  V+ G
Sbjct: 537 YGGDVAAPVFAKVMSG 552