Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 583 a.a., peptidoglycan synthetase FtsI (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  141 bits (355), Expect = 9e-38
 Identities = 161/611 (26%), Positives = 256/611 (41%), Gaps = 96/611 (15%)

Query: 27  VGILICM-GLLVTNLYNIQINQYQDYKTRSNDNRIKVVPIAPNRGLIFDRNGVLLAENRP 85
           VG +  M   LV     IQI +    +  S+   ++       RGLI DRNG +LA + P
Sbjct: 27  VGFVFAMFTCLVGRAAYIQIIEPDKLRHESDMRTLRTTSREVQRGLITDRNGDMLAVSVP 86

Query: 86  VFNLEVIPEKVP--NMEETIARLQQLIEISPEKLA-AFEKERKQ-TRRFNSVPLLTQLTD 141
           V  +   P++V   N    + R Q L ++  E +    +K R   T+RF     L +   
Sbjct: 87  VRAVWADPKQVNDNNGFADMRRWQALADVLHEPVEDVLDKVRSNPTKRFT---YLKRQVT 143

Query: 142 DEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVSRINDKDLERLDKEGKKANYQ 201
             VA + + Q K PGV + +  +RYYP GE+   +IG ++ I+D  +E            
Sbjct: 144 PAVADY-ITQLKLPGVFLKSESRRYYPGGEITAQLIG-ITNIDDVGIE------------ 189

Query: 202 ATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLKYVPPIPG-KDIVLNLDIELQ 260
                   G+E  Y   L GT   Q+V  +  G V+  L  V       D+VL++D  +Q
Sbjct: 190 --------GVENAYNSWLTGTPSKQKVRKSRDGHVVERLDIVQEGESPNDLVLSIDHRIQ 241

Query: 261 LYAYKLL-------EGRRGSIVALDPKDNGVLAMASSPSYDPNAFVHGISGKAYSDLLND 313
             AY+ L       +   GSIV LD     VLAM ++PS++PN+              N 
Sbjct: 242 QLAYRELKRTTEMNQATSGSIVVLDIHTGEVLAMVNTPSFNPNS------------RDNF 289

Query: 314 KRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGII-TPNTTRNDPGYWRIPNTDTRPFRDW 372
           +   + NR     + PGST+KPF+  +AL+ G + + +     PG+ R+     R   + 
Sbjct: 290 QTFRMRNRAMTDTFEPGSTIKPFVVAAALEAGTVKSTDVIPTSPGWMRLGGRQVRDASN- 348

Query: 373 LRWGHGRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGDLTGIDIYEESKANMP 432
               +G + + + L +S +    ++A  + + +L       G G  +GI++  ES   + 
Sbjct: 349 ----YGDMTLARILAKSSNVGISKLALSIPVQQLLGTYQSMGLGSFSGINLTGESAGLI- 403

Query: 433 TREWKMARHKVPWYQGDTIPVGIGQGYWTATPMQIAKATSVLVNHGKVIAPHLLR-ATID 491
                  RH+   ++  T+  G G    TAT +Q+A+  + L N G +    +L+     
Sbjct: 404 -----QDRHRWSDFERATLSFGYG---LTATTLQLARMYATLGNGGTLFPVSILKLKKPP 455

Query: 492 NGEQFSTQKETEYTTYPPIDGVPKKYWDMAIHGMYLVNHGAKGTARRAFQNMPYESAGKS 551
            GE+  +            + V K    M +    +   G  GT         Y  AGKS
Sbjct: 456 EGERVIS------------EAVAKDVLQMMVS---VTEKGGTGTLAHI---DGYPVAGKS 497

Query: 552 GTA-QVFGLAEGQKYNASELAEHLHDHALFTGFAPVKDPKVIVTFVLENGGGGSSNGAPV 610
           GT+ +      G  Y            ALF G APV +PK+ +  V+    G    G  V
Sbjct: 498 GTSRKAVAGGYGDDY-----------VALFAGVAPVNNPKLAIVVVVNEPKGDLYYGGSV 546

Query: 611 VRQIFDHVILG 621
               F  V+ G
Sbjct: 547 AGPAFAKVMSG 557