Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., penicillin-binding protein 2 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  663 bits (1710), Expect = 0.0
 Identities = 318/619 (51%), Positives = 443/619 (71%), Gaps = 13/619 (2%)

Query: 3   RQHTPIRDHQAETHLFRNRAIVSFVGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIKV 62
           ++   + DH AE  LF+ RA+ +F  ++  + +LVTNLY++Q+  Y+DY TRSNDNRI+V
Sbjct: 4   KKRITMHDHAAEASLFKRRALFTFFCVVALLSMLVTNLYHLQVESYKDYATRSNDNRIRV 63

Query: 63  VPIAPNRGLIFDRNGVLLAENRPVFNLEVIPEKVPNMEETIARLQQLIEISPEKLAAFEK 122
           VPIAP+RGLI+DRNGVLLAEN+P ++L+++PEK+ NM ET+  L +LIEISP++   F +
Sbjct: 64  VPIAPSRGLIYDRNGVLLAENQPFYSLDLVPEKIANMSETLDELGKLIEISPDERENFTE 123

Query: 123 ERKQTRRFNSVPLLTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVSR 182
             K  RRF  + L  QLT+++VA FSVNQH+FPG++V A LKR YPY   LTHV+GYV +
Sbjct: 124 ALKFHRRFKPLTLKNQLTEEQVAIFSVNQHRFPGITVEAGLKRNYPYVSQLTHVLGYVGK 183

Query: 183 INDKDLERLDKEGKKANYQATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLKY 242
           IN +D  +L++  +  NY AT+DIGK GIE++YE LLHGT G+ E EVN+RGR IRTLK 
Sbjct: 184 INTRDRAQLERNDQWKNYAATKDIGKQGIEKFYESLLHGTPGHLEEEVNNRGRTIRTLKI 243

Query: 243 VPPIPGKDIVLNLDIELQLYAYKLLEGRRGSIVALDPKDNGVLAMASSPSYDPNAFVHGI 302
           VPP PG+DI L LD++LQ  A +LL+G +GSIVA+DP+D G+LA+ SSPSYDPN FV GI
Sbjct: 244 VPPEPGQDIYLTLDLQLQQKAVELLQGHKGSIVAIDPRDGGILALVSSPSYDPNQFVQGI 303

Query: 303 SGKAYSDLLNDKRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGIITPNTTRNDPGYWRIP 362
           + K YSDLLNDK RPL+NR T G Y P STVKP IA+  L +  +T +T   DPG+W+IP
Sbjct: 304 NRKDYSDLLNDKSRPLINRATQGQYAPASTVKPIIALLGLDEKAVTEHTRIWDPGFWQIP 363

Query: 363 NTDTRPFRDWLRWGHGRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGDLTGID 422
             + R +RDW RWGHG V++  ++ ES DT+FY++AY +G+D ++ +M +FGFG  TG+D
Sbjct: 364 GVE-RKYRDWKRWGHGWVNVYSAIVESCDTYFYELAYKIGVDPIARFMEQFGFGQNTGVD 422

Query: 423 IYEESKANMPTREWKMARHKVPWYQGDTIPVGIGQGYWTATPMQIAKATSVLVNHGKVIA 482
           I+EES  NMP++EWK  ++   WY GDTI VGIGQGYWTATP+Q+A AT++L N+G+   
Sbjct: 423 IFEESTGNMPSKEWKRLKYNQAWYIGDTISVGIGQGYWTATPLQLASATAILANNGRRFP 482

Query: 483 PHLLRATIDNGEQFSTQKETEYTTYPPIDGVPKKYWDMAIHGMYLVNHGAKGTARRA-FQ 541
           PHLL++  DN    + + ++     PPI+    + W        ++N   + TA ++ F 
Sbjct: 483 PHLLKSIKDN----TAKIDSPINELPPIELKNPRNWK-------IINEAMRQTAHKSRFT 531

Query: 542 NMPYESAGKSGTAQVFGLAEGQKYNASELAEHLHDHALFTGFAPVKDPKVIVTFVLENGG 601
           +  Y +A K+GTAQV G+AE  KY+A+++AEH  D+AL   +AP ++PK+++  V+EN G
Sbjct: 532 DASYTAAMKTGTAQVIGVAENTKYDANKIAEHFRDNALVVAYAPFENPKIVLAVVMENAG 591

Query: 602 GGSSNGAPVVRQIFDHVIL 620
            G +N  PV R + D  +L
Sbjct: 592 WGGANAGPVARAMLDEYML 610