Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., penicillin-binding protein 2 (PBP-2) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  259 bits (662), Expect = 2e-73
 Identities = 189/650 (29%), Positives = 322/650 (49%), Gaps = 82/650 (12%)

Query: 17  LFRNRAIVSFVGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIKVVPIAPNRGLIFDRN 76
           L + + ++  + + I +  L+  L+ +QI    DYK  ++ N        P+RG I+DRN
Sbjct: 7   LEKRKFVIGGIALTIVLIYLI-RLFVLQITT-DDYKKNADSNAFLNKIQYPSRGAIYDRN 64

Query: 77  GVLLAENRPVFNLEVIPEKVPNMEETIARLQQLIEISPEKLAAFEKERKQTR-----RFN 131
           G LL  N+P +++ ++P++V N++ T+   + L     + L      R + R     R+ 
Sbjct: 65  GKLLVFNQPAYDITLVPKEVENLD-TLDLCESLGITRAQFLKIMSDMRDRRRNPGYSRYT 123

Query: 132 SVPLLTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVSRINDKDLERL 191
           +   ++QL+ +E   F     KFPG  +     R Y Y     H +G +  ++ KD+E  
Sbjct: 124 NQLFMSQLSAEECGVFQEKLFKFPGFYIQRRTIRQYSYNAA-AHALGDIGEVSVKDMEA- 181

Query: 192 DKEGKKANYQATRD-IGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLKYV------P 244
           D+EG    Y    D +GKLG+ER YE  L G  G + +  ++ GR+    +Y+      P
Sbjct: 182 DEEG----YYIRGDYVGKLGVERSYEKYLRGEKGVEILLRDAHGRIQG--RYMDGEYDRP 235

Query: 245 PIPGKDIVLNLDIELQLYAYKLLEGRRGSIVALDPKDNGVLAMASSPSYDPNAFVHGISG 304
            IPGK++ L+LDI+LQ+   +LL+ + GSIVA++P+   +L + SSP+YDP+  +    G
Sbjct: 236 SIPGKNLTLSLDIDLQILGERLLKNKIGSIVAIEPETGEILCLVSSPNYDPHLMIGRQRG 295

Query: 305 KAYSDLLNDKRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGIITPNTTRNDPGYWRIPNT 364
           K +  L  DK++PL+NR  +G+YPPGST K    ++ LQ+GII    T   P +      
Sbjct: 296 KNHLMLQRDKQKPLLNRALMGVYPPGSTFKTAQGLTFLQEGII----TEQSPSF------ 345

Query: 365 DTRPFRDWLRWG--------HGR-VDIIKSLEESVDTFFYQIAYDMGIDK--------LS 407
              P      +G        HG  + +I ++  S +++F    + M  D+        ++
Sbjct: 346 ---PCSRGFHYGRLTVGCHAHGSPLPLIPAIATSCNSYFCWGLFRMFGDRKYGSPQNAIT 402

Query: 408 SW---MMRFGFGDLTGIDIYEESKANMPTREWKMARHKVPWYQGDTIPVGIGQGYWTATP 464
            W   M+  GFG   G+D+  E +  +P  ++    ++  W     I + IGQG   +TP
Sbjct: 403 VWKDHMVSQGFGYKLGVDLPGEKRGLIPNAQFYDKAYRGHWNGLTVISISIGQGEILSTP 462

Query: 465 MQIAKATSVLVNHGKVIAPHLLRATIDNGEQFSTQKETEYTTYPPIDGVPKKYWDMAIHG 524
           +QIA   + + N G    PH+++  I + +  S  +    TT      + +++++  + G
Sbjct: 463 LQIANLGATIANRGHFTTPHIVK-EIQDAQLDSIYRHPRNTT------IERRHYESVVEG 515

Query: 525 MYLVNHGAKGTARRAFQNMP-YESAGKSGTAQVFGLAEGQKYNASELAEHLHDHALFTGF 583
           M     G  GT R     +P  E+ GK+GTAQ  G                HDH++F GF
Sbjct: 516 MRAAATG--GTCRMLSVMVPELEACGKTGTAQNRG----------------HDHSVFMGF 557

Query: 584 APVKDPKVIVTFVLENGGGGSSNGAPVVRQIFDHVILGKKEEEPKAESKE 633
           AP+  PK+ +   +ENGG G++ G P+   + +  + GK   E +  ++E
Sbjct: 558 APMNQPKIAIAVYVENGGWGATYGVPIGALMMEQYMKGKLSPENELRAEE 607