Pairwise Alignments

Query, 391 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., D-alanyl-D-alanine endopeptidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 26/279 (9%)

Query: 12  SSITLSITLSSTAF--ASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTK 69
           S+ + S+T  STA    +P       ++AA   +++D  + ++L     D     AS+TK
Sbjct: 25  SADSASVTTKSTATKATTPKKAHTKQEVAANSALVVDLKTNEILYSSNPDAVRPIASVTK 84

Query: 70  MMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMF-----VEVGTTVKVSDLNRG 124
           +MT+ V         + +++ + I       N  D+ +M      V +G+ +   ++   
Sbjct: 85  LMTAMV----TLDAKLPMDEKLTI-------NIKDTKEMRGVYSRVRIGSEISRKEMLLL 133

Query: 125 IIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDL 184
            ++ S N A  ++A H  G   AF+  MNA A +LGMKNS F    GL   N+ S+  DL
Sbjct: 134 TLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGMKNSRFVEPTGLSAKNV-SSARDL 192

Query: 185 ALLGQALIRDVPEEYAIYSEQKFTYN-GITQY-----NRNGLLWDKSMNVDGIKTGHTSG 238
            +L +A  +  P    + S +K T   G  +Y     N N L++  + ++   KTG T+ 
Sbjct: 193 VVLLKA-SQGYPMLGQLSSTEKKTVTFGKPKYSLDFRNTNRLVYKDNWDIHLTKTGFTNA 251

Query: 239 AGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSY 277
           AG+ LV        ++  VV+    +    A++ +L ++
Sbjct: 252 AGHCLVMRTEMAKRKVAFVVLDAKGKYTHMADANRLRNW 290