Pairwise Alignments

Query, 391 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., penicillin-binding protein 6 (RefSeq) from Shewanella sp. ANA-3

 Score =  542 bits (1396), Expect = e-159
 Identities = 268/391 (68%), Positives = 318/391 (81%), Gaps = 5/391 (1%)

Query: 1   MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
           +K  I   +L SS++L +       A PIVTPDAP +AAK YVLMDY+SG+++AE+    
Sbjct: 5   VKSPIKTLLLISSVSLPVYA-----AQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYE 59

Query: 61  KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
            L+PASLTKMMTSYVIGQE+K GN+S +DDV ISKNAW+KNF DSSKMF+EVG TVKVSD
Sbjct: 60  SLNPASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSD 119

Query: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
           LNRGIIIQSGNDACVAMAEH+AGTE AFVD+MN+WA  LGM++S+F NSHGLD  N  ST
Sbjct: 120 LNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENSHGLDSENHKST 179

Query: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
            YD+ALLG ALIRDVPEEY +YSE+ +T+NGI QYNRNGLLWD SMNVDGIKTGHTSGAG
Sbjct: 180 AYDMALLGAALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAG 239

Query: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
           YNLV+SAT+  MRL++VVMGT +E ARKAESKKLL+YGFRFFETV P+KAG++FV + IW
Sbjct: 240 YNLVASATKDGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETVTPYKAGDSFVTQQIW 299

Query: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQLKAPLKKGDIVGTLYYQLAGNDIA 360
            GDK T+ LGV  DT +T+ RG+AKDL A+F L K L APLKKG+ VG LY+QL G DIA
Sbjct: 300 YGDKSTVDLGVATDTPITISRGRAKDLKANFELTKPLDAPLKKGETVGRLYFQLDGKDIA 359

Query: 361 QYPLLALEDVQEGSLFSRLWDYLVLLFKSWF 391
           Q+PL+ L++V EGS FS+L DY   LF  WF
Sbjct: 360 QFPLVTLQEVNEGSWFSKLVDYFKQLFSGWF 390