Pairwise Alignments

Query, 737 a.a., chain-length determining protein from Vibrio cholerae E7946 ATCC 55056

Subject, 737 a.a., capsular exopolysaccharide family from Pseudomonas stutzeri RCH2

 Score =  139 bits (350), Expect = 5e-37
 Identities = 184/769 (23%), Positives = 309/769 (40%), Gaps = 93/769 (12%)

Query: 5   QFTQEEVIDIRQYFNVLLNYKWRILLFSVMVTAITLLFVLSMRSEYTARATILIESTQAK 64
           ++  +  ID+        ++K  I+  + +  A+ + + L     Y A A I IE  +A 
Sbjct: 10  EYDADNRIDLAAIMRTAYDHKALIIAITGLFAALGVFYALIATPIYQATAMIQIEPKKAA 69

Query: 65  AVSIEEVYGLDTKSQEYYLTQIEILKSDTI---AQEVIERLDLASDPEFDL--------- 112
              + E+  +   S    +T+I +LKS  +   A E ++   +A   +F +         
Sbjct: 70  ITGVPEI-SVRPDSVSQAVTEISLLKSRAVLGRAVEELKLYIVAKPRQFPVIGGFMARRH 128

Query: 113 SPESDASPSLKERLVEWMPFLQGFKQEETVADPDLEAYRQNRLILYKFKRGMEISPIRKT 172
            P +D +  L   L  +  +  G ++ E       EAY    L L     G       + 
Sbjct: 129 DPATDGA--LAAPLFGFTSYAWGGEKLEVFQLDVPEAYLGMELTLTAGNAGDFSLRDDEQ 186

Query: 173 QLVNIYYTAGDPKLAAKIANEIARVYMDSHLEAKLEVE-LKANTWLNTRMEELRTQLRES 231
           QL+      G    A +      ++   + LEA+   E L       T   E + +L+  
Sbjct: 187 QLI----LRGQVNQAVESQGFKVQI---AELEARPGTEFLLVRNRPQTTALEYQDRLKVG 239

Query: 232 EAKLQAFLQAEGLVD---------------------VQGVEGLATQELEELTSQMNKARD 270
           EA   + +    L D                     +Q     A Q LE L SQ+ + R 
Sbjct: 240 EAGKDSGIIYMSLEDPDPQLASRVLDEISRLYVSQNIQRSSAEAAQRLEFLRSQLPQVRK 299

Query: 271 RRVAAETLYQVANSYSKNDSDLTALSSIPEISNHPTIRDLKVAEVDAERKVSEFSKRYGP 330
               AE      NSY  +   +        + +     + +++E+  +R   ++ + Y  
Sbjct: 300 ELEKAEA---ALNSYQTSSKSVDISIETKGVLDQIVALETQISELTLKRV--DYDRLYTR 354

Query: 331 KHPKLKSASAQLEAVRKNLRAELRQLLNGINNELQAAKQSERSLQTEFNQRKSEFQTLTV 390
           +HP  ++   Q+                   NELQA K           Q   +   L +
Sbjct: 355 EHPTYRTLMTQM-------------------NELQAQKA----------QLLKKVDALPM 385

Query: 391 KNAKYSELKREVQTNRELFDLFLARQKETSASGDFNTTIARFTDQASAPLT-PSKPNKKL 449
              +   LKR+++   + + L + + +E            R  D A + +  PSKP K L
Sbjct: 386 TQQELLRLKRDMEVTTQTYTLLMNQAQEQDILRAGTIGNVRIIDNAYSMIEKPSKPVKPL 445

Query: 450 IVLLAFVVSFGFACVVAFIADAMTDTFADIKQVEKQLALSLLGVVPVVRKQRGKLDAKAY 509
           +V +A  V    +  V  +  A          +EK L + +   +P    Q     ++  
Sbjct: 446 VVAIAIFVGLLASAAVILLRQAFYRGVESPDAIEK-LGVPVYAGLPYSASQDQLNRSRKA 504

Query: 510 FDEKLRELT---------EAVRTIRTSYLLAHVNQDQHVVMLTSCLPGEGKTTSSLNLAL 560
            D K R L+         E++R++RTS   A +     V+M+TS  P  GK+  S NLA 
Sbjct: 505 RDGKTRLLSLTEPTDLAVESLRSLRTSLKFAMLEARNKVLMITSPTPSVGKSFVSSNLAA 564

Query: 561 SLAQM-EKTLLIDCDLRKPAIAHRFGISGSQPGVTNLLNGTQSLEDCVYHDEQSGLDILT 619
            +AQ  ++ LLID D+R+  + + FG++  + G+++ L    SL +     E   L  ++
Sbjct: 565 VIAQTGQRVLLIDGDMRRGYLHNLFGMA-PRNGLSDALASGLSLAEITNRTELKNLHFIS 623

Query: 620 AGVYASNPLELLSSSKFSELLADLRTRYQRIVIDTPPCLAVSDSFMLAQYVDSVILVIDA 679
           AG  A NP ELL    FS LL +    Y  I+IDTPP LAV+D+ ++AQ   + +LV   
Sbjct: 624 AGFSAPNPSELLMHDNFSRLLREAEKLYDFIIIDTPPVLAVTDAVLVAQQAGTNLLVARF 683

Query: 680 NHTRTPVVREVVGKLTQQGSRIDGVILNRLNAK-KASRY-SGYYHYQAY 726
             + +  +     +L Q G  + GVILN +  K   S Y SG Y Y  Y
Sbjct: 684 GLSTSSQIDASKRRLGQNGVLLKGVILNAVKRKASTSPYDSGAYGYYTY 732