Pairwise Alignments

Query, 737 a.a., chain-length determining protein from Vibrio cholerae E7946 ATCC 55056

Subject, 738 a.a., capsular exopolysaccharide family from Pseudomonas stutzeri RCH2

 Score =  150 bits (380), Expect = 2e-40
 Identities = 125/495 (25%), Positives = 216/495 (43%), Gaps = 54/495 (10%)

Query: 254 ATQELEELTSQMNKARDRRVAAETLYQVANSYSKNDSDLTALSSIPEISNHPTIRDLKVA 313
           ATQ LE L  Q+   R    AA+T     N Y      +   +    + +     + +++
Sbjct: 282 ATQSLEFLNEQIPTVRRNLEAAQT---ALNKYQTGSRSVDITAETQSVLDRIVDMERQIS 338

Query: 314 EVDAERKVSEFSKRYGPKHPKLKSASAQLEAVRKNLRAELRQLLNGINNELQAAKQSERS 373
           E + +R  +E  +R+  +HP  ++                  L+N IN            
Sbjct: 339 EQNLKR--TEMERRFTRQHPNFQA------------------LMNQINQ----------- 367

Query: 374 LQTEFNQRKSEFQTLTVKNAKYSELKREVQTNRELFDLFLARQKETSASGDFNTTIARFT 433
           LQ +  + + +  TL     +   L R+V+ + E + + L + +E            R  
Sbjct: 368 LQMQKEELEKQIGTLPSTQQELLRLTRDVEVSSETYSMLLNKTQELDIIRAGTVGNVRII 427

Query: 434 DQASAPL-TPSKPNKKLIVLLAFVVSFGFACVVAFIADAM--------------TDTFAD 478
           D A+A L  P KPNK L+V++A ++    A    ++ +A+              T  +A 
Sbjct: 428 DHAAADLENPVKPNKPLVVIVATLLGALLATAFVYVREALKRGVENPEDIERTGTPVYAS 487

Query: 479 IKQVEKQLALSLLGVVPVVRKQRGKLDAKAYFDEKLRELTEAVRTIRTSYLLAHVNQDQH 538
           I   EKQ AL     +   ++ +         ++     TEA+R++RTS   A +    +
Sbjct: 488 IPFTEKQSALEKR--LANFKRDKSTASYLLTINDPADLATEAMRSLRTSLHFAMIEAKNN 545

Query: 539 VVMLTSCLPGEGKTTSSLNLALSLAQMEK-TLLIDCDLRKPAIAHRFGISGSQPGVTNLL 597
           V+M+T   P  GK+  + NLA  +AQ  K  LLID D+RK  + H+        G++++L
Sbjct: 546 VLMITGPSPAVGKSFVTTNLAAVVAQSGKRVLLIDADMRKGYL-HKVMRCDGDKGLSDIL 604

Query: 598 NGTQSLEDCVYHDEQSGLDILTAGVYASNPLELLSSSKFSELLADLRTRYQRIVIDTPPC 657
           +G  +L D +   + + L ++T G    NP ELL    FS  + ++   Y  ++ DTPP 
Sbjct: 605 SGRITLFDAIQKTQLNNLHVITHGQLPPNPSELLMHENFSRFVKEISHMYDLVIFDTPPI 664

Query: 658 LAVSDSFMLAQYVDSVILVIDANHTRTPVVREVVGKLTQQGSRIDGVILNRLNAKKASRY 717
           LAV+D+ ++     + ++V          +     +L Q G  + GVI N +  +KAS Y
Sbjct: 665 LAVTDAALVGSQAGTTLMVTRYGLNGLKEIEAAKRRLEQNGLLVKGVIFNAV-VRKASTY 723

Query: 718 SGYYHYQAYYGEETK 732
             Y +YQ  Y   +K
Sbjct: 724 GEYGYYQYEYASNSK 738