Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., OMA family outer membrane protein from Sinorhizobium meliloti 1021

 Score = 75.9 bits (185), Expect = 8e-19
 Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 7/140 (5%)

Query: 6   LSFLLCLLVWPSL----AVANDDFYRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFL 61
           L  +L  L +P +    A A D  YRL  GD +     D+ EL     VS  G   +P +
Sbjct: 21  LLMVLWALAFPMITSMPAQAGD--YRLNSGDVLTFDFLDDAELPVTATVSGAGVAQFPLI 78

Query: 62  GRIRLKGKTLEEVKTTIHDGLLD-GYLINPNVSVSILEYRPFFVNGQVMKPGSYPYHPGL 120
           G + + G T+ E    +         L++P +S+ I  +RP FV G+V  PGS+P++ GL
Sbjct: 79  GGVEVIGLTVPEALAKLRSEYRRRDVLVDPKISLDISTFRPIFVLGEVKTPGSFPFYSGL 138

Query: 121 TVNKAITIAGGFTERASKTN 140
           TV +AI +AGG    A+  +
Sbjct: 139 TVEQAIGLAGGMQVAAASAS 158



 Score = 22.7 bits (47), Expect = 0.009
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 155 KATLLSKLQPGDILTVA 171
           KA+ L++L PGD+L V+
Sbjct: 396 KASTLTELVPGDVLMVS 412