Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 827 a.a., ClpX, ATPase regulatory subunit (RefSeq) from Shewanella amazonensis SB2B

 Score = 64.7 bits (156), Expect = 4e-15
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 26  YRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTIHDGLLDG 85
           Y +G GD + +Q+Y +   +F   V  +G + +P LG I L G +  E K  + D +   
Sbjct: 141 YMMGPGDVLNVQLYGKENKNFSLTVGRDGLVQFPDLGPISLVGMSFSEAKNFLTDKIAQS 200

Query: 86  YL-INPNVSVSILEYRPFFVNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNL 141
            + I  N+++  L     FV G   +PGSY      T+ +A+ ++GG  E  S  N+
Sbjct: 201 MIGIQANITMGELRSIRIFVAGDAYRPGSYTVSSLSTITQALFVSGGINEIGSLRNI 257



 Score = 39.7 bits (91), Expect = 1e-07
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFISSSDDPEAKPTKATLLS--- 160
           V GQV  P ++ Y  G T ++ + +AGG  +RA     +I  +D   A P  +   S   
Sbjct: 725 VMGQVQHPSTHRYKKGFTFDQYLELAGGPRKRADDDRAYILRADGSVAMPGSSYWFSTDE 784

Query: 161 KLQPGDILTV 170
           ++QPGD + +
Sbjct: 785 EMQPGDTIVM 794



 Score = 32.3 bits (72), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERA 136
           +NG V  PG YP   G T+   +  AGG  E A
Sbjct: 499 INGSVRFPGKYPITEGATIKDLLVAAGGLKEGA 531



 Score = 29.3 bits (64), Expect = 2e-04
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERAS-KTNLFISSSDDPEAKPTKATLLSKL 162
           + G+V  PG+Y    G T+   ++ AGG +E A+ ++ +F+  S   + K     L  +L
Sbjct: 594 IKGEVRFPGTYSIQRGETLKHVLSRAGGLSEDAAPRSAVFLRESVKQKEKTELLKLSDEL 653

Query: 163 Q 163
           +
Sbjct: 654 R 654