Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 920 a.a., polysaccharide export protein (RefSeq) from Shewanella loihica PV-4

 Score = 61.6 bits (148), Expect = 4e-14
 Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 26  YRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTIHDGLLDG 85
           Y +G GD+I++Q++ +    ++  ++  G+I +P LG I + G +  E++ ++   +   
Sbjct: 140 YLVGPGDRIKVQLFGKENKEYDLVINREGSIQFPELGPISVAGLSFAELRESLSHRISQQ 199

Query: 86  YL-INPNVSVSILEYRPFFVNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNL 141
            + I  N+++  L     F+ G   KPGSY      T+ +A+ +AGG  E  S  N+
Sbjct: 200 MIGIESNITMGELRSIRIFIAGDAYKPGSYTVSSLSTITQALFVAGGVNEIGSLRNI 256



 Score = 35.4 bits (80), Expect = 3e-06
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFISSSDDPEAKPTKATLLS--- 160
           V G+V    ++ +  GLT+++ + ++GG  ERA +   +I  ++     P ++   S   
Sbjct: 818 VMGEVQHAATHRFKEGLTLDQYLEMSGGARERADEDRTYIIKANGSVLLPNRSMWFSSNT 877

Query: 161 KLQPGDILTV 170
           +L PGD + V
Sbjct: 878 ELNPGDTIIV 887



 Score = 31.2 bits (69), Expect = 5e-05
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGG-----FTERASKTNLFISSSD 147
           ++G+V  PG YP   G  V   +  AGG     +T RA  T   I S +
Sbjct: 593 ISGKVRHPGVYPLSQGAKVKDLVIAAGGLVEGAYTARAELTTTVIGSEE 641



 Score = 28.5 bits (62), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERA 136
           + G+V  PG Y    G T+   I  AGGFT+ A
Sbjct: 687 IRGEVKFPGMYNIRRGETLADVIDRAGGFTQYA 719