Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., polysaccharide export protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 47.8 bits (112), Expect = 3e-10
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 31  GDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTIHDGLLDGYLINP 90
           GD++ ++++ +        V+D G ID   LG + + G    +V   I   L    + N 
Sbjct: 95  GDRLVLRLWGDRNFDGVVTVNDAGEIDLQDLGALPVAGLAQAQVTEAIRSKLSASGVENV 154

Query: 91  NVSVSILEYRP--FFVNGQVMKPGSYPYHPGLTVNKAITIAGGFTER 135
            V VS L+ RP   FV G VMKPG Y   P  +V   +  AGG   R
Sbjct: 155 QVYVSPLDGRPVSVFVTGFVMKPGRYNGAPSDSVLAFLDRAGGIDPR 201



 Score = 24.6 bits (52), Expect = 0.003
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFI 143
           V G+V+ P +  ++    +   +  AGG+T RA   N+ +
Sbjct: 464 VTGEVVMPQAIVWNGDRRLKDYVRGAGGYTNRADTGNILL 503