Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 921 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.1 bits (157), Expect = 3e-15
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 26  YRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTIHDGLLDG 85
           Y +G GD I+IQ+Y +    ++  ++  G I +P LG I + G T  E++ T+   +   
Sbjct: 141 YLVGPGDNIKIQLYGKENKEYDLVINREGVIQFPELGPIPVNGLTFSELRETLAQRIQQQ 200

Query: 86  YL-INPNVSVSILEYRPFFVNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNL 141
            + I  N+++  L     FV G   KPGSY      T+ +A+ +AGG  E  S  N+
Sbjct: 201 MIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQALFVAGGVNEIGSLRNV 257



 Score = 41.2 bits (95), Expect = 5e-08
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFISSSDDPEAKPTKATLLS--- 160
           V G+V  P ++ +  GLT+++ + ++GG  ERA     ++  ++     P++++  S   
Sbjct: 819 VMGEVQHPATHRFKDGLTIDQYLAMSGGARERADAGRTYVIQANGSVLMPSRSSWFSSGE 878

Query: 161 KLQPGDILTV 170
           +LQPGD + V
Sbjct: 879 QLQPGDTVIV 888



 Score = 35.8 bits (81), Expect = 2e-06
 Identities = 19/43 (44%), Positives = 23/43 (53%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASKTNLFISSS 146
           V+GQV  PG YP   G  VN  I  AGG  E A  T   ++S+
Sbjct: 594 VDGQVRLPGLYPLTSGAKVNDLIVAAGGLKEGAYTTRAELTST 636



 Score = 30.8 bits (68), Expect = 7e-05
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 104 VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERAS 137
           V G+V  PG Y    G T++  IT  GGFT+ A+
Sbjct: 688 VRGEVKFPGRYNIRRGETLSDLITRVGGFTDYAA 721